Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Sfpq
Plot displaying the genomic locations of a parental gene (in chr5) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name splicing factor proline and glutamine rich
Also known as -
Coordinate chr5:145079803-145088517
Strand +
Gene summary Predicted to enable several functions, including chromatin binding activity; histone deacetylase binding activity; and protein homodimerization activity. Predicted to be involved in several processes, including alternative mRNA splicing, via spliceosome; dendritic transport of messenger ribonucleoprotein complex; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within chromosome organization; double-strand break repair via homologous recombination; and positive regulation of sister chromatid cohesion. Predicted to be located in chromatin; nuclear matrix; and paraspeckles. Predicted to be part of RNA polymerase II transcription regulator complex. Predicted to be active in nucleus. Orthologous to human SFPQ (splicing factor proline and glutamine rich). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Sfpq

Retroname Coord Strand Genomic Region ENSG
SfpqP1 chrX:131506565-131507624 + Intergenic
 N/A UCSC

Expression

Transcript Sequences

>NM_001025271.1
GCTAAGCAAGGTGGCAACCACGTTCCCTGAGCGACTTCTCCGCTTCTGCCTCGACCGCCCCTTGACTACAGATATGTCTCGGGATCGGTTCCGGAGCCGCGGTGGTGGTGGTGGAGGCTTTCATCGGCGTGGAGGAGGCGGTGGCCGCGGCGGCCTCCACGACCGCTCTCCGCCGCCTGGCATGGTCAACCAGAATCGGCGGCCCATGGGCCCCGGCCCTGGCGGCCCGAATCCACTCCCGCCTCCACCTCCGCACCAGCAGCAGCAGCAACATTTCTGTTCGCCGCAGCCCCCGCCGCAGCAGCCTCCACCGCACCAGCAGCCGCCGCCACACCAGCCGCCCCATAAACAGCCCCCGCCTCCGCCGCAGGAATCCAAGCCCGTCGTCCCGCAAGGCCCCGGCTCGGCGCCCGGAGTGAGCACTGCGCCGCCTCCGGGGGTCTCGGCCCCGCCCGCCAACCCCCCTACCACCGGCGCTCCGCCGGGCCCGGGTCCTACCCCGACTCCGCCGCCCGCAGTCCCCTCTACTGCCCCCGGACCGCCTCCCCCTTCCACGCCGAGCAGCGGAGTCTCAACAACGCCTCCACAGACCGGTGGCCCTCCGCCACCGCCCGCCGGGGGCGCCGGTCCAGGGCCTAAGCAAGGCCCAGGCCCTGGCGGTCCCAAAGGCGGCAAGATGCCGGGTGGGCCTAAGCCTGGCGGTGGTCCGGGCATGGGCGCTCCTGGTGGCCACCCGAAGCCACCTCACCGAGGTGGCGGGGAGCCCCGTGGGGGCCGGCAGCACCACGCGCCCTACCACCAGCAGCACCATCAGGGCCCCCCTCCCGGCGGCCCGGGACCTCGCACAGAGGAAAAGATATCCGACTCGGAGGGATTTAAAGCCAACTTGTCTCTCTTGCGGAGGCCTGGAGAAAAAACTTACACACAGCGCTGTCGGTTGTTTGTGGGGAACCTACCTGCTGATATCACAGAGGATGAATTCAAAAGACTGTTTGCTAAATACGGAGAACCGGGAGAAGTTTTTATCAACAAGGGCAAAGGGTTCGGGTTCATTAAACTTGAGTCAAGAGCCTTGGCTGAAATTGCCAAAGCTGAACTTGATGATACCCCCATGAGAGGTAGACAGCTACGGGTTCGGTTTGCCACACATGCTGCAGCCCTGTCTGTTCGGAATCTTTCTCCTTATGTATCCAATGAACTTTTGGAAGAGGCCTTTAGCCAGTTTGGTCCTATTGAAAGGGCTGTTGTAATTGTGGATGATCGTGGAAGATCCACGGGGAAAGGCATTGTTGAATTTGCTTCGAAGCCAGCAGCAAGAAAAGCATTTGAAAGATGCAGTGAAGGTGTTTTCCTACTGACAACGACTCCTCGCCCAGTCATTGTGGAACCACTTGAGCAGTTAGATGATGAAGATGGTCTTCCTGAAAAACTGGCCCAGAAGAATCCAATGTATCAAAAGGAGAGAGAAACGCCTCCTCGTTTTGCTCAGCATGGCACATTTGAGTATGAATATTCTCAACGATGGAAGTCTTTGGATGAAATGGAAAAACAGCAAAGGGAACAAGTTGAAAAAAACATGAAGGATGCAAAAGACAAGTTGGAAAGTGAAATGGAAGATGCCTACCATGAACACCAAGCAAATCTTTTGCGCCAAGATCTGATGAGACGCCAGGAAGAATTAAGGCGCATGGAGGAACTTCACAGTCAAGAAATGCAGAAACGTAAAGAAATGCAGTTGAGGCAAGAGGAGGAACGGCGTAGAAGAGAGGAAGAGATGATGATTCGCCAACGTGAGATGGAAGAACAAATGAGACGCCAACGAGAAGAAAGCTACAGCAGGATGGGCTACATGGATCCAAGAGAAAGAGACATGAGAATGGGTGGTGGTGGAACAATGAACATGGGAGATCCCTATGGTTCAGGAGGCCAGAAATTTCCACCGCTAGGTGGTGGTGGTGGCATAGGTTATGAAGCTAATCCTGGAGTTCCACCAGCAACCATGAGTGGTTCCATGATGGGAAGCGACATGCGTACTGAGCGCTTTGGGCAGGGAGGTGCGGGTCCTGTGGGTGGACAGGGTCCTAGAGGAATGGGGCCTGGAACGCCAGCAGGATATGGTAGAGGGAGAGAAGAGTATGAAGGGCCAAATAAAAAACCCCGATTTTAGATACTTAGGCTTTCATTCCAGTTTGGTTTTGTCTTCTTGTTTAGATACCACTTAAATTCTTGGCATTTTAGTAAGAAAGCTACCTTTTTATGGATGTTAGCAGTTTATTGACCTGATATTTGTAAATGGCCTGTTTGGGCAGGTAAAATTATGTAACGCAGTGTTCGAAACAGGAGAAAAATTTTTTCATTTACTTTTTTTTTAACTGTATAATGTTTCTCAAGTTAATGGCAGTGTACCTTGTGCCACTGAATTTCCAAAGTGTACCATTTTTTTTTTACTGTGCTTCAAATAAATAGAAAAAAATA