Summary

Gene Name	Vps54
Specie	Rattus norvegicus
Full Name	VPS54 subunit of GARP complex
Also known as	Vsp54
Coordinate	chr14:106153408-106207715
Strand	+
Gene summary	Predicted to enable syntaxin binding activity. Predicted to be involved in Golgi to vacuole transport and retrograde transport, endosome to Golgi. Predicted to act upstream of or within several processes, including homeostasis of number of cells within a tissue; musculoskeletal movement; and neurofilament cytoskeleton organization. Located in membrane and trans-Golgi network. Orthologous to human VPS54 (VPS54 subunit of GARP complex). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Vps54

Retroname	Coord	Strand	Genomic Region	ENSG
Vps54P1	chr7:64391373-64393727	+	Intergenic	N/A	UCSC

Expression

Transcript Sequences

>NM_173147.1

GAGTGGTGATTTTATGCAATGGCTTCAAGCCACAGTTCTTCTCCAGTGCCTCAAGGAAGCAGCAGTGATGTTTTCTTTAAAAAAGAGGTAGATCCGACAAAGCACGTCCGACCTGTGCAGTCACTGCCAGACGTGTGTCCCAAGGAGCCCACAGTTACAGATCAACATAGATGGACTGTGTATCATTCCAAAGTAAATCTCCCAGCAGCATTAAATGATCCTACGTTAGCAAAAAGAGAATCGGACTTCTTCACAAAAACTTGGGGATTGGACTTTGTGGACACTGAAGTCATACCTTCACTCTACCTCCCACAGATCAGCAAGGAACATTTTATAGCATATCAGCAGGAGATCTCTCAGAGAGAGAAGATTCATGAGAGATGCAAGAATATTTGTCCTCCTAAAGATACCTTTGACAGGACTCTTTTACATATTCATGATAAATCCAGGACAGATCTGGAGCAAGTACCTAAGATTTTTATGAAACCAGATTTTGCCTTGGATGATTCTTTAACTTTTAATTCAGTTTTACCATGGTCTCATTTTAATACTGCTGGTGGAAAAGGAAATCGTGATGCAGCTTCTTCCAAGTTGCTTCAAGAAAAGCTGAGCCATTATCTGGATATTGTGGAAGTCAACATTGCTCACCAGATCTCTCTGCGTTCAGAAGCATTTTTTCATGCAATGACCTCTCAACACGAATTGCAGGACTACCTCAAGAAAACTTCCCAGGCTGTAAAAATGCTTCGAGATAAAATTGCACAGATTGATAAAGTTATGTGTGAAGGATCACTACAGATTTTAAGACTGGCACTTACCAGAAATAATTGTGTTAAAGTATACAATAAACTGAAGTTGATGGCCACTGTACACCAAACTCAGCCCACAGTGCAGGTGCTGCTGTCCACTTCTGAGTTCGTCGGCGCGCTGGACTTAATAGCAACGACTCAAGAGGTTCTGCAGCAGGAGCTGCAGGGCGTTCACAGCTTCCGGCATTTGGGATCACAGCTTTGTGAATTAGAAAAGCTGATTGATAAAATGATGATTGCAGAGTTTTCTACTTATTCTCATAGTGACTTAAACAGACCGCTGGAAGGGGAATGCCAAGTTTTAGAAGAGGAAAGATTAGTATCTCTAGTGTTTGGGCTTTTGAAACAAAGAAAACTTAATTTTTTAGAAATCTATGGTGAAGAAATGATTATTACAGCAAAGAACATCATTAAAGAGTGTGTGATTAATAAAGTTGCACAAGTAGAAGAAATAGACACAGATGCTGTTGTGAAGCTTGCAGATCAAATGAGAATGCTGAATTTTCCCCAGTGGATTGATCTGTTAAAGGATATTTTCTCTAAGTTTACAATTTTCCTACAGAGAGTTAAGGCAACACTGAATGTCATCCACAGTGTTGTTCTCTCAGTTCTTGACAAAAACCAAAGGACTAGAGAATTGGAGGAGGTCTCACAGCAGAGGAGTGCTGGGAAGGACAACTCCTTGGACACAGAGGTGGCTTACCTGACGCACGAAGGCCTGTTCATAAGTGACGCTTTCAGTGAGGCTGAGCCAGCGTCCGCGGCAGTCGATACTACCTCTCAGAGAAACACGTCTCCACACAGCGAGCCCTGCAGCAGCGATTCGGTATCCGAACCAGAATGTACTACTGATTCCTCATCCAGCAAGGAGCAGACACCAGCGTCTGCCACTCTGGGAGGTGTAGACATCATAGTCAGTGAAGACATGAGATTAACTGACTTGGAGCTTGGAAAATTAGCAAGTAACATCCAGGAATTATTGTGTAATGCTTCTGACGTATGCCACGATCGAGCTGTCAAATTTCTCATGTCAAGAGCAAAGGATGGTTTTCTTGAAAAGCTGAATTCCACGGAGTTCATAGCACTGTCGAGATTAATGGAGACGTTCATCGTGGACACTGAGCAGATTTGTGGGAGGAAGAGCACCTCACTGCTTGGCGCCCTTCAGAGCCAAGCAAACAAGTTTGTGAACAGGTTTCACGAGGAGAGGCGGACCAAGCTCAGCCTCCTTTTAGACAATGAGCGTTGGAAGCAGGCTGATGTGCCCGCAGAATTTCAGGATCTAGTTGATTCTATAGCAGATGGAAAGATCGCTTTACCTGATAAAAAGCCAGCAGCTACAGAAGACAGGAAGCCCGCCGATGTTCTTGTTGTCGAGGGGCACCAGTATGCTGTCGTCGGAACTGTCTTGCTGTTGATAAGAATCATCCTTGAGTATTGCCAGTGTGTGGATAACATCCCCTCTGTCACTACTGACATGCTCACTCGCCTGACGGACTTGCTGAAGTACTTCAATTCAAGAAGTTGCCAGTTAGTTCTTGGAGCTGGTGCTTTGCAAGTTGTTGGACTAAAAACAATTACTACAAAAAACTTGGCCCTCTCTTCACGGTGTTTGCAGCTGATTGTGCACTACATTCCTGTGATCCGGGCTCACTTTGAGGCCCGGCTGCCCCCCAAGCAGTGGAGCCTGCTTAGGCATTTCGATCACATCACCAAGGATTACCATGACCATATAGATGAGATATCATCTAAGCTTGTAGCCATAATGGATAGCCTATTTGATAAGCTGTTATCAAAGTATGAGGTGAAAGCTCCTGTTCCTTCCCCATGTTTCAGGAATATTTGTAAGCAAATGACAAAAATGCATGAAGCTATATTTGATCTTCTTCCCGAAGAACAGACGCAGATGTTATTTTTAAGAATTAATGCAAGTTACAAATTCCACTTGAAAAAACAGTTATCACACTTAAATGTAATAAATGATGGAGGACCTCAAAATGGGTTGGTCACAGCAGACGTAGCTTTTTACACTGGAAATCTTCAAGCCTTAAAAGGCCTTAAAGATCTGGATCTAAATATGGCGGAGATCTGGGAACAGAAGAGGTGATGACAGACTGGAGACCTGGGTCGTTCATCTGACCATGGGATGTTTTTGAAGAAAATCTGGATGCCTGCTGTGCTAGGAACTGAACCTGGGACCCAAAGTGAACTAAGGCGGGGAAGGGAAGAGAAGATCAGTGTTGGGAACTGGATTCAGTGGGATCTACAGAGAATGCTCTTCTGTGCATCCTTCAGGAAGGAGTAGCTGATCAGGTGTCTACCGCATTTTTCATTCTCTCTGGAAACAGACTCAGGTTTCTTTGGACCAAATCCAAAAGAACACATAGCTGTAAGACAGCTGCAGTTGCCTAGAATGCTCCGTAAACTTTATATAAAATGCTCTGCATTTCTCCCAGTGCAATGAAATTCATATGGTGTCCCACCTTATTTAATGATGGTACAATTGAACATATTAAATCTTAGTCAACCTCTGTAGGAAGTTTTCTCTATGAAAGTAAAGCTATTTGAAAAATTATTTTTTTACAGATCTTTATAAAAAATAAACATCTTTTGATTGCTTGGATTTAGAAATTCAGTTTTTGTTTTAGTGACCAATGTCAAGTTTCAGGTTTTGTGTGTTGCATATTTAACTTTTTCACTACCACTGTTATGTCACTGGGTAAAGCCTCAAACTGCTAAATACATAGAAGACTGACTATAAAGAATAAAGAATATTTGCATTTACTTATGCAACTACTAATTTAAATACTTTCCAGAAGTGGGATACACAAAGCTAGGTTTAACAGATCTATTTATTAAAATGCCTATGAAGGGTTTGGGGTAGCATTCTGTGTTTTCTTTGCTTTTTCATTTCTAACAGAGGCAAGGATACATAGTCATATGACATGCCTACTTATCAATTATCATTTAACACTTAAAGAACATGAAATGTGGCCCTCTTGGATTCTTGCTTTGAAGTTACTTTTGATATGTATATAAACAAAGACCAGGGATAAACAGAATATTTAAAATACAGGCTGCTGTGTTGGGGCCAGAAATACAAGGTCAGTGAATAAGCTATTTGAAGACTTTTATAATGTCTACTTTCAACACCAGAATTGGCAGCACTCTACAAATGAAAGTGCCTGTGTCTCACCAAGAATCCTGCCTACCTGTCGGAGTGCCTAATCTTGTGGTGATAATGTACAATGAAATAGTCTTGTGGGTTTTTTGTTTTCTCAAGAAGATTTTTTTTTATCATTATAGAGGTATGTCATTGGTTCTTAAACTGTCAAAAATAAAGATGTAAAAAATCA