Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Pes1
Plot displaying the genomic locations of a parental gene (in chr14) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name pescadillo ribosomal biogenesis factor 1
Also known as -
Coordinate chr14:84211600-84227980
Strand +
Gene summary Predicted to enable RNA binding activity. Predicted to be involved in maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); and regulation of cell cycle. Predicted to act upstream of or within several processes, including nucleolus organization; protein localization to organelle; and rRNA processing. Predicted to be located in condensed chromosome; cytosol; and nuclear lumen. Predicted to be part of PeBoW complex and preribosome, large subunit precursor. Orthologous to human PES1 (pescadillo ribosomal biogenesis factor 1). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Pes1

Retroname Coord Strand Genomic Region ENSG
Pes1P1 chr2:49030515-49031028 + Intergenic
 N/A UCSC
Pes1P2 chr7:53758270-53760219 - Intergenic
 N/A UCSC
Pes1P3 chr8:27931052-27931747 + Intergenic
 N/A UCSC
Pes1P4 chr11:21727722-21729344 - Intergenic
 N/A UCSC
Pes1P5 chr15:82907217-82908997 + Intergenic
 N/A UCSC
Pes1P6 chrX:92350341-92352381 - Intergenic
 N/A UCSC

Expression

Transcript Sequences

>NM_001044228.1
CTCAACGTGGAGCTATGGGAGGTCTGGAAAAGAAGAAGTATGAACGAGGCTCTGCCACCAATTATATCACGAGAAACAAAGCTCGGAAGAAGCTGCAGCTGAGCCTGCCTGATTTCAGGCGGCTGTGCATCCTGAAAGGTATTTATCCTCATGAACCCAAGCATAAGAAGAAAGTTAACAAGGGTTCCACAGCAGCCCGAACATTTTACCTTATCAAAGATATTAAATTCCTCCTCCATGAACCCATCGTCAACAAGTTCCGAGAGTACAAGgtgtttgtccggaagctccgcAAAGCCTATGGGAAGAGCGAGTGGAATGCTGTAGAACGCCTCAAGGACAATAAACCCAGCTACAAACTGGACCACATTGTCAAGGAGCGGTACCCCACATTTATCGATGCGTTGCGTGACCTCGATGATGCCCTGTCCATGTGCTTCCTCTTCTCCACCTTCCCTCGGACGGGCAAGTGCCACGTGCAGACCATCCAGCTGTGCCGCCGCCTCACCGTGGAGTTCATGCACTACGTCATTGCTGCCCGAGCCCTGCGCAAGGTCTTCCTGTCCATCAAAGGCATCTACTATCAGGCTGAGGTGCTGGGTCAGCCCATCGTGTGGATTGCACCCTACGCTTTCTCCCATGATCATCCAACAGATGTGGACTACAGAGTCATGGCCACCTTCACTGAGTTCTATACCACTCTCCTGGGCTTCGTCAACTTCCGCCTCTACCAGTCACTCAACCTTCACTACCCACCCAAGATTGAAAGTCAAGCCCAAGCAGAGATGAAGGTCAGCGAGGACACATATGCATTGGATTCCGAGAGCTCTATGGAGAAACTGGCTGCCCTCAGTGCCAGCCTGGCCCGAGTGGTGGTGCCTGCTGTAGAGGAGGCTGAGGCTGATGAGTTTCCCACTGACGGGGAAGTGACAGCACAGGAGGAAGATCGAAGGAAAGAGCTGGAGGCTCAGGAAAAACACAAGAAGCTCTTTGAAGGCCTGAAGTTCTTCCTGAACCGAGAGGTGCCCCGTGAAGCGTTGGCCTTCATCATCAGGAGTTTTGGTGGGGATGTATCCTGGGACAAGTCTTTGTGCATTGGAGCCACCTATGACAGCACAGACTCTGGCATCACCCACCAGATTGTTGATCGGCCGGGGCAGCAAACCCCCATCATTGGCAGGTACTACGTACAGCCCCAGTGGGTGTTTGACTGTGTGAATGCCCGACTCCTCCTCCCTGTGGCAGAGTACTTCCCTGGGGTGCAGCTGCCCCCACACCTTTCACCCTTCGTGTCTGAGAAGGAAGGAGATTACATTCCCCCTGAGAAGCTGAAGCTCCTGGCTTTGCAGCGGGGAGAAGACCCAGGAAACTTGGAAGAGGAAGAGGAAGACGAGGATGATGAAGGCGATGACAGCGAAGGTGACGGTGATGTTGCAGTGGAAAACgaggaggaagttgtggaagctgagtcagaggaggaggaggaggCGCACCTGTCAGCCTTGGAGCAGCAGAGGCTGGGAGGGAAGAAGCCCCAGGTTATGGCCGGCACTGTGAAGCTGGAAGACAGGCAGCGGCTGGCCCAGGAGGAAGAAAGTGAGGCCAAGCGCCTGGCCATCATGATGATGAAGAAGCGAGAGAAGTACCTTTATCAAAAGATCATGTTTGGCAAGCGGCGCAAAATCCGAGAGGCCAACAAGCTTGCAGAGAAGAGGAAAGCCCATGACGACGCTGTGAGGTCTGAGAAAAAGGCCAAGAGGACAAGACCTGTGTGAGCTCTAGTCGTCCCTCACTGAAATTTGGACTTGGCAGAAGCAGCTAGTGAAACACAGACACATCAGCCAGCACTGTCATGCTTTTGGTGGTGTGTGGCCAGCCCCAGCCTCCTGTGTGGTTCATGCCATTGTCTGGCCAAAGGGGACTGTGCCCGACCCAGTCTTAACCCAGGAATCCATCTGACATCCTCATTTTCCTTAGCTTTCTACAGCCTCCTACATAGCTGTGCCCTTCCTGTGCTCAGGATGCTGTCGAGGAGTAAGGGTGGGAAGCTTTTGTTATTAAATGGTTGAATCTTTGCAGCCAA