Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Ptma
Plot displaying the genomic locations of a parental gene (in chr9) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name prothymosin alpha
Also known as -
Coordinate chr9:93545396-93549436
Strand +
Gene summary Predicted to enable DNA-binding transcription factor binding activity and histone binding activity. Involved in negative regulation of cysteine-type endopeptidase activity involved in apoptotic process; positive regulation of NF-kappaB transcription factor activity; and positive regulation of transcription by RNA polymerase II. Predicted to be located in cytosol and nucleoplasm. Orthologous to human PTMA (prothymosin alpha). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Ptma

Retroname Coord Strand Genomic Region ENSG
PtmaP1 chr2:11267344-11268319 + Intergenic
N/A UCSC
PtmaP2 chr3:61554579-61555664 + Intergenic
N/A UCSC
PtmaP3 chr4:78977241-78978505 + Intergenic
N/A UCSC
PtmaP4 chr4:95647367-95648438 + Intergenic
N/A UCSC
PtmaP5 chr5:31922057-31922996 - Intergenic
N/A UCSC
PtmaP6 chr5:56620604-56621764 - Intergenic
N/A UCSC
PtmaP7 chr5:58967726-58968887 + Intergenic
N/A UCSC
PtmaP8 chr6:42946403-42946828 + Intergenic
N/A UCSC
PtmaP9 chr6:91396091-91397083 - Intergenic
N/A UCSC
PtmaP10 chr9:29155792-29156111 + Intergenic
N/A UCSC
PtmaP11 chr11:44481171-44482265 - Intergenic
N/A UCSC
PtmaP12 chr12:19485219-19486543 + Intergenic
N/A UCSC
PtmaP13 chr13:55700708-55701439 - Intergenic
N/A UCSC
PtmaP14 chr13:63340369-63341391 - Intergenic
N/A UCSC
PtmaP15 chr13:89873041-89873994 - Intergenic
N/A UCSC
PtmaP16 chr16:48450572-48451663 + Intergenic
N/A UCSC
PtmaP17 chr17:28888910-28889795 - Intergenic
N/A UCSC
PtmaP18 chr18:86278500-86279646 - Intergenic
N/A UCSC
PtmaP19 chrX:1512520-1513171 - Intergenic
N/A UCSC
PtmaP20 chrX:19075864-19076762 - Intergenic
N/A UCSC

Expression

Transcript Sequences

>NM_021740.1
GTTCCCGGGTCGTGCTCCGCGCTCACTGCAGCCACCTTCGCCGCCCACCGTCTCCTCCAACGCGGACTCCGGCAGCTTTCTCGCCAGAGTCCTCGAAACTCGACTAATTCCTTACGCGTAGCACCAGACCACCGGCGTGCCCCACCATGTCAGACGCGGCAGTGGACACCAGCTCCGAGATCACCACCAAGGACTTGAAGGAGAAGAAGGAAGTTGTGGAGGAGGCAGAGAATGGAAGAGACGCACCTGCCAATGGGAACGCTCAAAATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAGGTagatgaagaagaggaagaaggtggggaggaagaggaggaggaggaagaaggtgatggtgaggaagaagatggagatgaagatgaggaAGCTGAGGCTCCTACGGGCAAGCGGGTAGCTGAGGATGATGAGGATGATGATGTTGAGACCAAGAAGCAGAAGAAGACTGATGAGGATGACTAGACAGCAAAAGGAAAAGCTAACCTTACGCACCGTGACCTATTCACCCTCCACTTCCCGTCTCAGAATTTAAACGTGGTCACCTTCGAGTAGAGAAGCAGGCCCCCGCCCGCCCACTGCGGGCAGTGCCACCCACACATGACATGCGCTCTTCACCACCCCACCAAAACCACAACATGAATTGGCAACATGGGAGGAGAAAAGAACCAGAACTTCCCAGGCCCTGCTTTTTTTCTTAAAAATACTTTAAAAGGAAAATTTGTTTGTATTTTTTATTTACATTTTATATTTTTGTACATATTGTTAGGGGTCAGCCATTTTTAATGATAACGGGTGACCAAACCAGCCTTCAGAGCGTTTTCTGTCCTACTTCAGACTTTACTTGTGGTGTGACCATGTTCATTATACTCTCAAAGGAGAAAAAAAACCTTGTaaaaaaaacaaaaacaacaacaaaaaaaacaaTCTTATTCTGAGCATTCCAGTAACTTTTTTTGTGTATGTACCTAGCTGTACTATAAGTAGTTGGTTTGTATGAGATGGTTAAAAAGGCCAAAGATAAAAAGATTTTTTTTTCCTTTTTTTTTGTCTATGAAGTTGCTGTTTATTTTTTTGGCCTGTTTGATGTATGTGTGAAACAATGTCCAACAATAAACCGGAATTTTATTTTGCTGAGTTGTTC