Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Rpsa
Plot displaying the genomic locations of a parental gene (in chr8) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name ribosomal protein SA
Also known as Lamr1
Coordinate chr8:128806053-128809987
Strand +
Gene summary Predicted to enable laminin binding activity and ribosome binding activity. Predicted to be a structural constituent of ribosome. Involved in cell-cell adhesion and epithelial cell differentiation. Located in several cellular components, including basement membrane; cytosol; and neuronal cell body. Part of cytosolic small ribosomal subunit. Biomarker of irritable bowel syndrome and sciatic neuropathy. Orthologous to human RPSA (ribosomal protein SA). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Rpsa

Retroname Coord Strand Genomic Region ENSG
RpsaP1 chr1:140898131-140898586 + Intergenic
N/A UCSC
RpsaP2 chr1:232753285-232754172 - Intergenic
N/A UCSC
RpsaP3 chr1:57199714-57200329 - Intergenic
N/A UCSC
RpsaP4 chr1:78473690-78473859 - Intragenic
N/A UCSC
RpsaP5 chr1:86832349-86833202 - Intergenic
N/A UCSC
RpsaP6 chr2:106447868-106448017 - Intergenic
N/A UCSC
RpsaP7 chr3:146347477-146348302 + Intergenic
N/A UCSC
RpsaP8 chr4:86929268-86930231 - Intergenic
N/A UCSC
RpsaP9 chr5:119427431-119427724 - Intergenic
N/A UCSC
RpsaP10 chr5:73171094-73171827 + Intergenic
N/A UCSC
RpsaP11 chr6:125117399-125118380 + Intergenic
N/A UCSC
RpsaP12 chr6:37805731-37805918 - Intergenic
N/A UCSC
RpsaP13 chr6:37805916-37806179 + Intergenic
N/A UCSC
RpsaP14 chr6:52844833-52845015 - Intergenic
N/A UCSC
RpsaP15 chr6:94327580-94328530 - Intergenic
N/A UCSC
RpsaP16 chr8:100207790-100208763 + Intergenic
N/A UCSC
RpsaP17 chr8:116049625-116050567 - Intergenic
N/A UCSC
RpsaP18 chr8:20181761-20182758 + Intergenic
N/A UCSC
RpsaP19 chr8:21545069-21545708 + Intergenic
N/A UCSC
RpsaP20 chr8:77702469-77702824 - Intragenic
N/A UCSC
RpsaP21 chr9:85347268-85348195 + Intergenic
N/A UCSC
RpsaP22 chr10:65976161-65976347 - Intergenic
N/A UCSC
RpsaP23 chr11:45378442-45379388 + Intergenic
N/A UCSC
RpsaP24 chr12:25815364-25816071 + Intergenic
N/A UCSC
RpsaP25 chr13:29321382-29321605 + Intergenic
N/A UCSC
RpsaP27 chr14:60814920-60815326 + Intergenic
N/A UCSC
RpsaP28 chr15:71277612-71278582 + Intergenic
N/A UCSC
RpsaP29 chr16:17142693-17143565 - Intergenic
N/A UCSC
RpsaP31 chr18:15972406-15973263 - Intergenic
N/A UCSC
RpsaP32 chr18:36497449-36498289 - Intragenic
N/A UCSC
RpsaP33 chr18:41905037-41905667 - Intergenic
N/A UCSC
RpsaP34 chr20:23248011-23248972 + Intergenic
N/A UCSC
RpsaP36 chrX:112126563-112127275 + Intergenic
N/A UCSC
RpsaP37 chrX:144586482-144587072 + Intergenic
N/A UCSC
RpsaP39 chrX:64800280-64801251 + Intragenic
N/A UCSC
RpsaP40 chrX:68873812-68874632 - Intergenic
N/A UCSC
RpsaP26 chr14:51439015-51440042 + Intergenic
N/A UCSC
RpsaP30 chr17:36712721-36713748 - Intragenic
N/A UCSC
RpsaP35 chrX:101844644-101845636 - Intergenic
N/A UCSC
RpsaP38 chrX:38854011-38855006 - Intergenic
N/A UCSC

Expression

Transcript Sequences

>NM_017138.2
CTGGAACGGGTCCGTACGGCGTTGTTCTTGGTTCCCATCGTAACTTAAAAGGGAAACTTACACAATGTCCGGAGGCCTTGACGTCCTGCAGATGAAGGAGGAGGATGTCCTCAAATTCCTTGCTGCAGGAACCCACTTAGGTGGCACCAACCTTGACTTTCAGATGGAGCAGTACATCTACAAAAGGAAAAGTGACGGTATCTACATCATCAACCTGAAGAGGACTTGGGAGAAGCTGTTGTTAGCCGCTCGAGCTATTGTTGCCATTGAGAACCCTGCTGATGTCAGCGTCATCTCCTCCAGGAACACTGGCCAGCGAGCTGTGCTGAAGTTTGCCGCTGCCACAGGAGCCACTCCAATTGCTGGCCGCTTCACACCTGGGACCTTCACTAACCAGATCCAAGCAGCCTTCAGGGAGCCCCGGCTTCTAGTGGTGACTGATCCCCGGGCTGACCACCAGCCCCTCACAGAGGCCTCTTACGTCAACCTGCCCACCATTGCTCTTTGTAACACAGATTCTCCCCTGCGCTATGTGGACATTGCCATCCCATGCAACAACAAGGGAGCTCACTCAGTGGGTCTCATGTGGTGGATGCTGGCCAGGGAAGTACTCCGCATGCGAGGAACCATCTCCCGGGAGCACCCATGGGAGGTTATGCCTGATCTTTACTTCTACAGGGACCCAGAGGAGATTGAGAAGGAGGAGCAGGCTGCCGCTGAGAAGGCTGTGACCAAGGAGGAATTCCAGGGTGAATGGACGGCACCAGCGCCTGAGTTCACTGCTGCTCAGCCTGAGGTGGCCGACTGGTCTGAGGGTGTGCAGGTGCCCTCTGTGCCCATTCAGCAGTTCCCCACAGAAGACTGGAGTGCACAGCCGGCCACTGAGGACTGGTCAGCAGCTCCCACAGCACAGGCTACTGAGTGGGTTGGAGCCACCACTGAGTGGTCCTGAGCTCCTCTGCAGGTGCCTGAGCGAAGGGAAAAAAGGTGGAAGGAAAATAAAGTTCCTGAAAGCTG
>XM_008766672.2
TAACGTGTGTTGCTATTGGCTCTCTGTGGCTTAATTAAGGACGTCATTTCCGGCCGCCCGTCCTTTCCGCGCTACCCTGGAACGGGTCCGTACGGCGTTGTTCTTGGTTCCCATCGTAACTTAAAAGGGAAACTTACACAATGTCCGGAGGCCTTGACGTCCTGCAGATGAAGGAGGAGGATGTCCTCAAATTCCTTGCTGCAGGAACCCACTTAGGTGGCACCAACCTTGACTTTCAGATGGAGCAGTACATCTACAAAAGGAAAAGTGACGGTATCTACATCATCAACCTGAAGAGGACTTGGGAGAAGCTGTTGTTAGCCGCTCGAGCTATTGTTGCCATTGAGAACCCTGCTGATGTCAGCGTCATCTCCTCCAGGAACACTGGCCAGCGAGCTGTGCTGAAGTTTGCCGCTGCCACAGGAGCCACTCCAATTGCTGGCCGCTTCACACCTGGGACCTTCACTAACCAGATCCAAGCAGCCTTCAGGGAGCCCCGGCTTCTAGTGGTGACTGATCCCCGGGCTGACCACCAGCCCCTCACAGAGGCCTCTTACGTCAACCTGCCCACCATTGCTCTTTGTAACACAGATTCTCCCCTGCGCTATGTGGACATTGCCATCCCATGCAACAACAAGGGAGCTCACTCAGTGGGTCTCATGTGGTGGATGCTGGCCAGGGAAGTACTCCGCATGCGAGGAACCATCTCCCGGGAGCACCCATGGGAGGTTATGCCTGATCTTTACTTCTACAGGGACCCAGAGGAGATTGAGAAGGAGGAGCAGGCTGCCGCTGAGAAGGCTGTGACCAAGGAGGAATTCCAGGGTGAATGGACGGCACCAGCGCCTGAGTTCACTGCTGCTCAGCCTGAGGTGGCCGACTGGTCTGAGGGTGTGCAGGTGCCCTCTGTGCCCATTCAGCAGTTCCCCACAGACTGGAGTGCACAGCCGGCCACTGAGGACTGGTCAGCAGCTCCCACAGCACAGGCTACTGAGTGGGTTGGAGCCACCACTGAGTGGTCCTGAGCTCCTCTGCAGGTGCCTGAGCGAAGGGAAAAAAGGTGGAAGGAAAATAAAGTTCCTGAAAGCTGC