Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Ctr9
Plot displaying the genomic locations of a parental gene (in chr1) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name CTR9 homolog, Paf1/RNA polymerase II complex component
Also known as Sh2bp1
Coordinate chr1:175839140-175869167
Strand +
Gene summary Predicted to enable RNA polymerase II complex binding activity and SH2 domain binding activity. Predicted to be involved in several processes, including histone modification; negative regulation of RNA metabolic process; and positive regulation of histone modification. Predicted to act upstream of or within blastocyst development and regulation of genetic imprinting. Predicted to be located in nucleoplasm and transcriptionally active chromatin. Predicted to be part of Cdc73/Paf1 complex. Orthologous to human CTR9 (CTR9 homolog, Paf1/RNA polymerase II complex component). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Ctr9

Retroname Coord Strand Genomic Region ENSG
Ctr9P1 chr3:89490982-89491534 + Intergenic
 N/A UCSC

Expression

Transcript Sequences

>NM_001100661.1
GGAGAAGGTGCATCTCAGGCAGCTCCGCTGGGTGTGAGGTGTGGTAACCTCTTGCAAGACTGGAAGCCCGGACTACGAGCTCCGGAGCCGCAGAGTGAGAAGCGCCTGCTTTCAGAGCTCGCCATGTCGCGGGGTTCCATCGAGATTCCCCTCCGGGATACTGACGAGGTCATTGAACTTGACTTCGATCAGTTACCGGAGGGGGATGAAGTTATCAGTATTCTGAAGCAGGAGCACACACAACTGCACATATGGATTGCTTTGGCGCTGGAGTACTACAAGCAAGGGAAAACAGAAGAGTTTGTGAAGCTGCTGGAGGCTGCACGGATAGATGGCAATTTGGACTATCGAGACCACGAGAAAGACCAGATGACTTGCTTGGATACATTGGCAGCCTACTATGTACAACAGGCTCGGAAAGAAAAGAACAAAGACAATAAGAAAGACCTTATTACGCAGGCAACTTTGTTGTATACAATGGCTGATAAAATTATTATGTATGATCAGAACCATTTGTTGGGAAGAGCCTGCTTCTGCCTGCTCGAGGGTGACAAAATGGACCAAGCTGACGCACAGTTTCATTTTGTACTTAACCAGTCTCCAAACAATATTCCAGCCCTTCTTGGGAAAGCTTGTATCTCATTCAACAAGAAGGACTACAGAGGAGCCCTTGCTTACTATAAAAAAGCATTGCGCACTAACCCAGGATGTCCAGCTGAAGTTCGTCTAGGAATGGGCCATTGCTTTGTCAAACTGAACAAACTGGAAAAAGCCCGACTAGCATTCAGCAGAGCCCTGGAACTCAACTCTAAGTGTGTGGGAGCACTGGTCGGACTGGCTGTTCTAGAACTCAACAATAAAGAGGCTGATTCCATCAAAAATGGTGTGCAGCTTCTTTCCAGAGCCTACACTATTGATCCTAGCAACCCTATGGTACTGAACCATTTGGCAAACCACTTTTTCTTCAAGAAGGATTATAGTAAAGTGCAGCACCTGGCTCTCCACGCGTTCCACAACACAGAGGTGGAGGCCATGCAAGCAGAGAGCTGTTACCAGCTGGCTCGGTCCTTCCATGTTCAGGAAGATTATGACCAGGCCTTTCAGTACTACTATCAAGCCACACAGTTTGCTTCATCTTCTTTTGTCCTACCATTTTTTGGTTTGGGACAAATGTATATTTATCGAGGTGACAAAGAAAATGCATCTCAGTGTTTCGAGAAAGTTTTGAAAGCTTATCCGAACAATTATGAAACTATGAAAATTCTTGGCTCTCTCTATGCTGCTTCAGAAGATCAGGAGAAAAGAGACATAGCCAAGGGCCATTTGAAGAAGGTTACAGAACAGTATCCTGATGACGTGGAAGCTTGGATTGAGTTGGCCCAGATCTTAGAACAGACTGACATACAGGGTGCCCTTTCAGCCTATGGAACGGCAACACGAATCCTGCAGGAGAAGGTGCAGGCCGATGTCCCGCCTGAGATTTTGAATAATGTTGGGGCCCTCCATTTTAGACTTGGAAACCTAGGCGAAGCAAAGAAGTACTTCCTGGCCTCACTGGACCGAGCAAAGGCAGAGGCGGAGCATGATGAACACTATTACAATGCCATCTCTGTCACCACATCCTACAATTTAGCCAGGCTCTACGAGGCCATGTGTGAATTTCATGAAGCAGAGAAACTGTACAAAAACATTTTACGAGAGCATCCTAACTATGTTGATTGCTATCTGCGCCTAGGAGCCATGGCCAGAGATAAAGGAAACTTCTATGAAGCTTCAGATTGGTTTAAGGAAGCCCTTCAGATCAATCAGGACCATCCCGATGCCTGGTCTTTGATTGGTAACCTCCATCTGGCAAAACAAGAGTGGGGCCCAGGTCAGAAGAAGTTTGAGAGGATCTTAAAACAGCCAGCCACACAGAGTGACACCTACTCTATGCTGGCCCTTGGCAATGTGTGGCTCCAGACTTTGCATCAGCCAACCCGAGACCGAGAAAAGGAAAAGCGCCATCAAGACCGTGCGCTGGCCATCTACAAACAAGTCCTGAGAAATGATGCCAAGAACCTGTATGCTGCCAATGGCATAGGAGCTGTCTTGGCCCACAAAGGATATTTCCGTGAAGCTCGTGATGTGTTCGCCCAAGTGAGAGAAGCAACAGCAGATATCAGTGACGTGTGGCTGAACTTAGCACACATCTACGTCGAGCAGAAGCAGTATATCAGCGCCGTTCAGATGTATGAGAACTGCCTCCGAAAGTTCTATAAGCACCAAAACACTGAAGTTGTGCTCTACCTGGCCCGTGCCCTCTTCAAGTGTGGCAAGTTGCAGGAGTGCAAGCAGACTCTGCTGAAGGCCCGACACGTGGCACCCAGCGACACAGTTCTGATGTTTAATGTGGCCTTGGTCTTGCAAAGATTAGCTACCTCTGTCCTGAAAGATGAAAAAAGTAATTTGAAGGAAGTCCTTAATGCTGTGAAAGAGCTGGAGCTTGCACACAGATACTTCAGTTACTTGAGTAAAGTTGGAGATAAGATGAGATTTGATTTGGCCCTTGCTGCCTCTGAAGCCAGGCAGTGCTCTGACTTACTGAGCCAGGCCCAATACCATGTGGCTCGGGCACGCAAGCAGGATGAGGAGGAACGGGAGCTGCGGGCCAAGCAGGAGCAGGAGAAGGAGCTCCTAAGACAGAAGCTTCTCAAAGAGCAGGAAGAAAAACGTCTCAGAGAAAAGGAAGAGCAAAAGAAACTTTTGGAACAGCGGGCCCAGTATGTGGAGAAGACCAAAAATATCCTCATGTTCACTGGCGAGACTGAAGCAACAAAAGAGAAGAAAAGAGGTGGAGGTGGAGGGCGGCGTTCCAAGAAAGGAGGCGAGTTTGATGAGTTTGTCAACGATGACACTGATGACGACCTCCCTATATCCaagaagaagaagaaaaggaagggcagtggcagtgaacaggaaggcgaagaggaggaaggtggagagaggaagaagaagaggaggagaagACCTCCAAAGGGAGAAGAAGGATCTGATGATGATGAAACAGAAAATGGCCCCAAACCAAAGAAGCGCCGTCCACCGAGAGCAGAGAAAAAGAAGGCTCCCAAGCCAGAACGCCTGCCTCCTTCAATGAAAGGAAAAATAAAATCCAAAGCCATTATATCATCAAGCGATGATTCTTCAGATGAGGATAAACTGAAAATTGCTGATGAAGGACATCCCAGGAACAGCAACAGCGACTCTGATGATGACGAGAGGCCCAACAGACGCGCCTCATCGGAGAGCGACTCAGATGACAACCAGAACAAGTCTGGCAGCGAGGCGGGTAGCCCCCGGAGGTCTGGTAGGCAGGAGTCCGATGAGGATTCCGACAGTGACCAGCCGTCCAGAAAGAGAAGGCGCTCCGGCTCTGAGCAGTCGGACAATGAGTCTGCGCAGTCCGGGAGGAGCCCCTCCGGAGGCTCAGAGAATGAGAACGATTCTCGCCCGGTTTCTCCAAGTGCAGAGTCGGACCACGAATCAGAGCAGGGCTCTGACAACGAAGGTTCTGGCCAAGGCTCTGGAAATGAATCGGAACCAGAGGGCTCAAACAATGAGGCCTCAGACCGAGGCTCAGAACATGGATCAGATGATAGCGACTAGGTTCATTTCATCAAAGACTCCATAGGGTGGGGGGAGCTTTATATATATAAAAGCTGTGATAAAAAACATTTCAGATAGTCGTTTGTGAAATTTTCTTAAGGCAATTTTTTTTTTCTACTTGTATATTTACTAACTTCCAAGAGACATTTCCTGTGCTGGAGAGTCCAGTGTCTGACCCTGGAGCAATGAGACTCCTGCGTTGTGGTGCAGCCCCACCTGCCATATGTGAAAACTGCAGTGATAACAGATGCTAAAGCATTCCTGCAAGGCTTGCCCAGGCTAGCCCCATCTCCTCTCCGGTTAGCAGCATGCTGCTATGTACGGTTTTGTTGCAAACTTGTACCAAATGTTGCAGAAGCCGAGATATATGCCTTTGTTCCCTTTTGAGTTGAGACTGAAAGTTTTATTTCCAGAGGAAGACATGTCCCTGTACTGAACTCTGAAAGGCAGGTGTTTACAGTGTGAGGCTCCACCATGAGTCGGAGTGGCCAACACTGGGGAGGGTGAGGGGTGGAGAGTGTTTTTCTGTTGTTAGAGTGGGAAGAGCTTCCCAGCCGCTTAATAAACTCTTTACCAACTGTGCTGGGTA