RCPedia: Genes

Summary

Gene Name	Ptbp1	Plot displaying the genomic locations of a parental gene (in chr7) and its retrocopy(ies). Each line represents a retrocopy.
Specie	Rattus norvegicus
Full Name	polypyrimidine tract binding protein 1
Also known as	PTB1\|Ptb\|Pybp\|Pybp1\|Pybp2
Coordinate	chr7:12663965-12673723
Strand	-
Gene summary	Enables nucleic acid binding activity and single-stranded DNA endodeoxyribonuclease activity. Involved in several processes, including mRNA metabolic process; positive regulation of cellular component organization; and positive regulation of gene expression. Located in cytoplasm; neuron projection terminus; and nucleus. Orthologous to human PTBP1 (polypyrimidine tract binding protein 1). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Ptbp1

Retroname	Coord	Strand	Genomic Region	ENSG
Ptbp1P2	chr4:104020003-104022869	+	Intergenic	N/A	UCSC
Ptbp1P5	chr8:58958320-58961040	-	Intragenic	N/A	UCSC
Ptbp1P6	chr15:9438708-9440329	-	Intergenic	N/A	UCSC
Ptbp1P1	chr3:89553443-89556130	-	Intergenic	N/A	UCSC
Ptbp1P3	chr6:13834717-13836053	-	Intergenic	N/A	UCSC
Ptbp1P4	chr7:131970487-131973229	+	Intergenic	N/A	UCSC
Ptbp1P7	chrX:17484944-17485405	-	Intergenic	N/A	UCSC

Expression

Transcript Sequences

>NM_001271057.1
GTTGGGTCGGTTTCTGCTATTCCTGCGCCTCCGCTCCGTCCCCTGCGGGTCTCCTCTGTGTGCCATGGACGGCATCGTCCCAGACATAGCAGTCGGTACAAAGCGGGGATCCGACGAGCTCTTCTCCACGTGTGTCAGCAACGGCCCCTTCATCATGAGCAGCTCGGCCTCAGCAGCCAACGGAAATGATAGCAAGAAGTTCAAAGGTGATAACAGGAGCACAGGAGTTCCTTCCAGAGTCATCCATGTCCGAAAGCTACCTAGTGATGTCACTGAGGGCGAGGTCATCTCCCTGGGGCTGCCCTTTGGGAAAGTTACCAACCTCCTTATGCTGAAGGGGAAGAACCAGGCCTTCATTGAAATGAGCACAGAGGAGGCTGCCAACACTATGGTTAACTACTACACATCGGTGGCGCCAGTGCTTCGTGGACAGCCCATCTACATCCAGTTCTCCAACCACAAGGAGCTCAAAACCGACAGCTCGCCCAACCAGGCACGTGCCCAGGCAGCCCTGCAGGCTGTGAACTCCGTACAGTCAGGAAACCTGGCCTTGGCAGCCTCTGCTGCTGCCGTGGATGCAGGAATGGCAATGGCAGGCCAGAGCCCAGTGCTCAGGATCATTGTGGAGAACCTTTTCTACCCAGTGACACTGGACGTGCTGCACCAGATCTTCTCGAAGTTTGGCACAGTCCTGAAGATCATCACGTTCACCAAGAACAACCAGTTCCAGGCGCTGCTGCAGTATGCTGACCCTGTGAGCGCCCAGCATGCCAAGCTGTCCCTGGATGGCCAGAACATCTACAATGCCTGCTGCACGCTGCGCATCGACTTCTCCAAGCTCACCAGTCTCAACGTCAAATACAACAACGACAAGAGCCGAGACTACACACGCCCTGACCTGCCCTCTGGAGACAGCCAGCCATCACTGGATCAGACCATGGCAGCAGCCTTTGGTGCGCCCGGCATAATGTCAGCCTCTCCGTATGCAGGAGCCGGGTTCCCTCCCACCTTTGCCATCCCTCAGGCCGCAGGCCTCTCTGTTCCTAATGTCCATGGAGCCCTGGCACCCCTGGCCATACCCTctgctgctgctgctgctgctgcagcCGGCCGCATTGCCATCCCAGGGCTGGCAGGCGCCGGGAATTCCGTCCTTTTGGTCAGCAACTTGAACCCTGAGAGAGTCACACCCCAAAGCCTCTTTATTCTCTTCGGCGTCTACGGTGATGTGCAGCGGGTGAAGATCCTGTTCAACAAGAAGGAGAACGCACTTGTGCAGATGGCAGACGGCAGCCAGGCCCAGCTGGCCATGAGCCACCTGAACGGGCACAAGCTGCATGGGAAGTCAGTGCGCATCACCCTGTCAAAGCACCAGAGTGTGCAGCTGCCTCGTGAGGGACAGGAGGACCAGGGCCTGACCAAGGACTATGGCAGCTCACCGCTGCACCGCTTCAAGAAACCTGGCTCCAAGAACTTTCAGAACATCTTTCCTCCCTCAGCTACCCTGCACCTCTCCAACATCCCGCCCTCTGTGTCAGAGGATGACCTCAAGAGCCTCTTCTCCAGCAATGGCGGTGTGGTCAAAGGCTTCAAGTTCTTCCAGAAGGACCGCAAGATGGCACTGATCCAGATGGGCTCTGTGGAGGAGGCAGTGCAGGCACTAATTGAGCTGCACAACCATGACCTGGGCGAGAACCACCACCTGCGAGTGTCCTTTTCCAAGTCCACCATCTAGGTGCCTGTGGGCCTGCGAAAGCTTCCGCCATTCCAGAAAAGCCACTTTAAAAAGCAGCTGAAGTGACCTTACAGACCAGAGATTTTATTTTTTTAAAGAGAGATCAGTTTACCTGTTTTTAAAAAAATTAAATCTAGCCCACTTTGCCGTGGCAGGAAATGGCTTGGGCCACAGAGGCCCAGTCCCAGCAACCATGCCTTGAGGGGCTTAGGCGTGAGGCCACAGCGGTGCCCCGAACACAGCCGCTTTCTGTGCCTTACAAAACCAGCGTGCCTCACGGCCGCACACCCACCCTCTAAGGCCACCAGTTGTCTCTAGACCTGCAGTGAGCCAGGCGGCCTATACTTAGGCTCCCCAATGCCGTGTAAGAGCTGGGGCCACTCCCCTACACCCTTATAATCAAGTGACATGATTCTCCCATGTCCCTGGCCAGCCCAGAGGGCCCAGGCCGTCCTCAGCTGCCGAGCCTTGTGTGACCTTTGTATTCTATTCCGTGGGGTCACAGACACCTGTGCCTAGCAATCTTTCCACTTGACCAAATACCCGAGTCTTTTCCATTTATATGCAAGAGATAGAGTTTTTAAGTAACTTTTTATAGCAGTGGTACAATTGTATGTGTGTACTCTAAGCTTCTCTGTCCCCTGCACTCCTTCCTTCCAGTGACCAACTTGCAGGTGGGCCCAGGCCAGGGCTGGAGAAGAAGCTCTGAGGCTTGTGGGTGTCCTACCTTCAAATTTTGGACCAAAGTTTTGTTCTCTGCCCGCCTCTGACTATGCCCAGTTGAGGGGCTGACCTCTAGGCCTTAATGTCCTTCCTGGACGCCCACCTCCATCCTAGCCTGTTTCTATGGGAGGGGTTCCCTGCACCTCAGTTCTGTGAAAGTCATGGAAGAGTGTAAATATTTATGATTTTATACCTGTGGGGCTGAGGCGGTGCAGCATTTTTTATGGTGACAGATGTATATTTTGGTAACGACTACAGGCTCAGTATTGTCCTGGGGCCAGCCCTGGCCACATCTACCCCAGCCCAGATGGTGTATTGGGGGGAGGGGGACTTTCCATTAAAGCAGTTTTATAACCTTTGCCTTCCCTGAGCCCTTCATTCTGAGCTGTAGGCCAGGCTGGGCCTGGAGTCAATAAACAACTGTGTCTTGCA

>NM_022516.5
GTTGGGTCGGTTTCTGCTATTCCTGCGCCTCCGCTCCGTCCCCTGCGGGTCTCCTCTGTGTGCCATGGACGGCATCGTCCCAGACATAGCAGTCGGTACAAAGCGGGGATCCGACGAGCTCTTCTCCACGTGTGTCAGCAACGGCCCCTTCATCATGAGCAGCTCGGCCTCAGCAGCCAACGGAAATGATAGCAAGAAGTTCAAAGGTGATAACAGGAGCACAGGAGTTCCTTCCAGAGTCATCCATGTCCGAAAGCTACCTAGTGATGTCACTGAGGGCGAGGTCATCTCCCTGGGGCTGCCCTTTGGGAAAGTTACCAACCTCCTTATGCTGAAGGGGAAGAACCAGGCCTTCATTGAAATGAGCACAGAGGAGGCTGCCAACACTATGGTTAACTACTACACATCGGTGGCGCCAGTGCTTCGTGGACAGCCCATCTACATCCAGTTCTCCAACCACAAGGAGCTCAAAACCGACAGCTCGCCCAACCAGGCACGTGCCCAGGCAGCCCTGCAGGCTGTGAACTCCGTACAGTCAGGAAACCTGGCCTTGGCAGCCTCTGCTGCTGCCGTGGATGCAGGAATGGCAATGGCAGGCCAGAGCCCAGTGCTCAGGATCATTGTGGAGAACCTTTTCTACCCAGTGACACTGGACGTGCTGCACCAGATCTTCTCGAAGTTTGGCACAGTCCTGAAGATCATCACGTTCACCAAGAACAACCAGTTCCAGGCGCTGCTGCAGTATGCTGACCCTGTGAGCGCCCAGCATGCCAAGCTGTCCCTGGATGGCCAGAACATCTACAATGCCTGCTGCACGCTGCGCATCGACTTCTCCAAGCTCACCAGTCTCAACGTCAAATACAACAACGACAAGAGCCGAGACTACACACGCCCTGACCTGCCCTCTGGAGACAGCCAGCCATCACTGGATCAGACCATGGCAGCAGCCTTTGGCCTCTCTGTTCCTAATGTCCATGGAGCCCTGGCACCCCTGGCCATACCCTctgctgctgctgctgctgctgcagcCGGCCGCATTGCCATCCCAGGGCTGGCAGGCGCCGGGAATTCCGTCCTTTTGGTCAGCAACTTGAACCCTGAGAGAGTCACACCCCAAAGCCTCTTTATTCTCTTCGGCGTCTACGGTGATGTGCAGCGGGTGAAGATCCTGTTCAACAAGAAGGAGAACGCACTTGTGCAGATGGCAGACGGCAGCCAGGCCCAGCTGGCCATGAGCCACCTGAACGGGCACAAGCTGCATGGGAAGTCAGTGCGCATCACCCTGTCAAAGCACCAGAGTGTGCAGCTGCCTCGTGAGGGACAGGAGGACCAGGGCCTGACCAAGGACTATGGCAGCTCACCGCTGCACCGCTTCAAGAAACCTGGCTCCAAGAACTTTCAGAACATCTTTCCTCCCTCAGCTACCCTGCACCTCTCCAACATCCCGCCCTCTGTGTCAGAGGATGACCTCAAGAGCCTCTTCTCCAGCAATGGCGGTGTGGTCAAAGGCTTCAAGTTCTTCCAGAAGGACCGCAAGATGGCACTGATCCAGATGGGCTCTGTGGAGGAGGCAGTGCAGGCACTAATTGAGCTGCACAACCATGACCTGGGCGAGAACCACCACCTGCGAGTGTCCTTTTCCAAGTCCACCATCTAGGTGCCTGTGGGCCTGCGAAAGCTTCCGCCATTCCAGAAAAGCCACTTTAAAAAGCAGCTGAAGTGACCTTACAGACCAGAGATTTTATTTTTTTAAAGAGAGATCAGTTTACCTGTTTTTAAAAAAATTAAATCTAGCCCACTTTGCCGTGGCAGGAAATGGCTTGGGCCACAGAGGCCCAGTCCCAGCAACCATGCCTTGAGGGGCTTAGGCGTGAGGCCACAGCGGTGCCCCGAACACAGCCGCTTTCTGTGCCTTACAAAACCAGCGTGCCTCACGGCCGCACACCCACCCTCTAAGGCCACCAGTTGTCTCTAGACCTGCAGTGAGCCAGGCGGCCTATACTTAGGCTCCCCAATGCCGTGTAAGAGCTGGGGCCACTCCCCTACACCCTTATAATCAAGTGACATGATTCTCCCATGTCCCTGGCCAGCCCAGAGGGCCCAGGCCGTCCTCAGCTGCCGAGCCTTGTGTGACCTTTGTATTCTATTCCGTGGGGTCACAGACACCTGTGCCTAGCAATCTTTCCACTTGACCAAATACCCGAGTCTTTTCCATTTATATGCAAGAGATAGAGTTTTTAAGTAACTTTTTATAGCAGTGGTACAATTGTATGTGTGTACTCTAAGCTTCTCTGTCCCCTGCACTCCTTCCTTCCAGTGACCAACTTGCAGGTGGGCCCAGGCCAGGGCTGGAGAAGAAGCTCTGAGGCTTGTGGGTGTCCTACCTTCAAATTTTGGACCAAAGTTTTGTTCTCTGCCCGCCTCTGACTATGCCCAGTTGAGGGGCTGACCTCTAGGCCTTAATGTCCTTCCTGGACGCCCACCTCCATCCTAGCCTGTTTCTATGGGAGGGGTTCCCTGCACCTCAGTTCTGTGAAAGTCATGGAAGAGTGTAAATATTTATGATTTTATACCTGTGGGGCTGAGGCGGTGCAGCATTTTTTATGGTGACAGATGTATATTTTGGTAACGACTACAGGCTCAGTATTGTCCTGGGGCCAGCCCTGGCCACATCTACCCCAGCCCAGATGGTGTATTGGGGGGAGGGGGACTTTCCATTAAAGCAGTTTTATAACCTTTGCCTTCCCTGAGCCCTTCATTCTGAGCTGTAGGCCAGGCTGGGCCTGGAGTCAATAAACAACTGTGTCTTGCA