Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Edf1
Plot displaying the genomic locations of a parental gene (in chr3) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name endothelial differentiation-related factor 1
Also known as CAP-19
Coordinate chr3:2781169-2785474
Strand +
Gene summary Predicted to enable TFIID-class transcription factor complex binding activity and transcription coactivator activity. Predicted to be involved in positive regulation of DNA binding activity. Predicted to be located in cytosol; nucleolus; and nucleoplasm. Predicted to be active in nucleus. Orthologous to human EDF1 (endothelial differentiation related factor 1). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Edf1

Retroname Coord Strand Genomic Region ENSG
Edf1P1 chr4:146506870-146509134 + Intergenic
N/A UCSC
Edf1P2 chr4:147104003-147106267 + Intragenic
N/A UCSC
Edf1P3 chr8:29071144-29071702 - Intragenic
N/A UCSC
Edf1P4 chr10:48256248-48256754 - Intragenic
N/A UCSC
Edf1P5 chr16:51679007-51679668 + Intergenic
N/A UCSC
Edf1P6 chr18:70417881-70418532 - Intergenic
N/A UCSC

Expression

Transcript Sequences

>NM_001106557.1
TCGCGTCGCCGCGCCGGGTCTCGAGCAGCTGCCAGAGCCGCCGGACAGACCGCCGCCCCCGCCGCGTCATGGCCGAGAGTGACTGGGACACCGTGACGGTGCTGCGCAAGAAGGGCCCCACGGCCGCACAGGCCAAGTCTAAGCAGGCCATCTTAGCAGCTCAGCGACGAGGAGAAGATGTGGAGACATCCAAAAAATGGGCTGCTGGCCAGAACAAGCAGCATTCCATCACTAAAAACACAGCCAAGCTAGACCGGGAGACAGAGGAGCTGCACCACGACAGGGTGACCCTGGAGGTGGGCAAAGTGATCCAGCGGGGCCGGCAGAGCAAAGGCCTGACGCAGAAGGACCTGGCCACGAAAATCAATGAAAAGCCGCAAGTCATCGCAGACTATGAAAGTGGACGGGCCATTCCGAATAACCAGGTTTTGGGCAAAATTGAGAGAGCCATCGGCCTCAAGCTCCGGGGGAAGGACATCGGGAAGCCTATCGAGAAGGGGCCGAAGGCGAAATGAACACAAAGCCTCGAAGCCAGTGGTTCCGGCTGAGCTCTTCTGGCTGGTCCCCCAGGACCACCAGCACTGCCGTGGGTCTCCTCACATGGTCAAACGGAACATGGGGGTCAGGCCTGTGTGCCCCCTCAACCCATAACTGCTGTCAAACAAAGCAAAACCTTGGAAAGTGA