Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Cbx3
Plot displaying the genomic locations of a parental gene (in chr4) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name chromobox 3
Also known as Hp1-gamma
Coordinate chr4:81243809-81257898
Strand +
Gene summary Predicted to enable several functions, including histone methyltransferase binding activity; identical protein binding activity; and transcription coregulator binding activity. Involved in cellular response to dexamethasone stimulus. Located in nucleus and senescence-associated heterochromatin focus. Orthologous to human CBX3 (chromobox 3). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Cbx3

Retroname Coord Strand Genomic Region ENSG
Cbx3P1 chr2:186922815-186925254 + Intergenic
N/A UCSC
Cbx3P2 chr2:27675661-27677664 - Intragenic
N/A UCSC
Cbx3P3 chr2:47854420-47854694 + Intergenic
N/A UCSC
Cbx3P4 chr2:97937853-97938849 + Intergenic
N/A UCSC
Cbx3P11 chr8:20412529-20413961 - Intergenic
N/A UCSC
Cbx3P13 chr12:1504865-1505519 - Intergenic
N/A UCSC
Cbx3P16 chr13:28611724-28612734 - Intergenic
N/A UCSC
Cbx3P5 chr3:103105659-103106286 + Intergenic
N/A UCSC
Cbx3P6 chr3:15969769-15971445 + Intergenic
N/A UCSC
Cbx3P7 chr3:530275-530557 - Intergenic
N/A UCSC
Cbx3P8 chr4:162496324-162498137 - Intragenic
N/A UCSC
Cbx3P9 chr5:70462589-70463631 - Intragenic
N/A UCSC
Cbx3P10 chr7:9456641-9457229 + Intergenic
N/A UCSC
Cbx3P12 chr10:57664192-57666031 - Intergenic
N/A UCSC
Cbx3P14 chr12:479130-479565 + Intergenic
N/A UCSC
Cbx3P15 chr12:5553251-5554770 - Intergenic
N/A UCSC
Cbx3P17 chr15:49772877-49773309 - Intergenic
N/A UCSC
Cbx3P18 chr16:32508370-32510140 - Intragenic
N/A UCSC
Cbx3P19 chr17:54409951-54410388 + Intergenic
N/A UCSC

Expression

Transcript Sequences

>NM_001008313.2
GGGAGACTCTGCAGGATCCGCGGCCCTGAGCATCTGAGCGCTCTTCAAGTCTCCGATTAAATTTTAAAAATGGCCTCCAATAAAACTACATTGCAAAAAATGGGAAAGAAACAGAATGGAAAGAGTAAAAAAGTTGAAGAGGCAGAGCCTGAAGAATTTGTGGTAGAAAAAGTACTGGACCGTCGTGTAGTGAATGGGAAGGTGGAGTATTTCCTGAAGTGGAAGGGGTTCACAGATGCTGATAATACTTGGGAACCAGAAGAAAATTTAGATTGTCCAGAATTAATTGAAGCATTTCTTAATTCTCAAAAAGCTGGTAAAGAAAAAGATGGTACAAAAAGGAAATCTTTATCTGACAGTGAATCTGATGATAGCAAATCGAAGAAGAAGAGAGATGCTGCTGACAAGCCCAGGGGCTTTGCCAGGGGCCTTGACCCTGAGCGAATAATCGGTGCCACAGACAGCAGTGGAGAGCTAATGTTTCTCATGAAATGGAAGGACTCAGATGAAGCTGACTTGGTGCTGGCAAAGGAGGCGAATATGAAGTGTCCTCAGATTGTCATCGCCTTCTATGAGGAGAGGCTGACTTGGCATTCTTGTCCCGAAGATGAAGCACAATAATTGTTTGCATTtatatatatatatttatatatatatatatataATCTGGATCTTGGGTTTTGAATTACTAGTGTGGAAAAAATAGCATTCTAATGAAAATCAAGTTTGATATGCTGGTTTTGAAAGTATTGACAGTAGTTGGGATATTTTTGGTTTTTGTTCTGCATCAAAAGGCACTGATTCCTTTGAGCAAGTGAGAGCTTTCTGTAGTTGCTTCCTTTAACAGTAGAATATTTGATACCATGTTGTATTTCCTCAGCTTTGAAGAACAGCTTTTCTTAATTGCTGGGGAGATTTTACAGTCATTACTCAAGTCAGAACTTATTTTTAACTGGGACACAGAAGGACCATTCTGGgtttttttgtttgtttgttcgtatgCAGTGTATGCATAAAACACTTACATAACCTGTCTGTTTTATCTTTTTTTTAATACTCAAAAGAACTGAATGTGAAAACGCAAGTTGATGAGATTCCATCACCGTGAATGTTCTCCTGAAACCATAACCTTTCAGAATAAGCAGAGTCTGTAATTTATTGGATAGTTTATTTACAGAATGTTGTCCATACCAACACCCCTTCAGGAAATGGAATTAGACAACATAGTAGTATGATTTAATAGCAAGACTTGgccgagtatggtggtgtgcacctttaatcccagaactctggaggcagatagagctctgatttaagaggcccctggtctacagaggcaggtctaggtcagTGGGTCTGTGTAAAGGTTCCTCTGGTGAACCATTCCTTTGTAGGACGTTAAAATCTGTACTAAAAGGTTATGATTCATGGAATCTGTTTGATGTGGAAATAGAATCATGGTTGGAGCTGATGTTGGCGATTTAAGACCTGCTGACTAAGTGAGTGAACAAAATTTGCTAATATCAATTAGTGCCCTGCATGCCTTTCCTTTACCCTGACTCATTCCTTACGGGTAGGATCAATCTTTTCAGTATTTGCATTCTGGTTCAATTAGCCAGAAAAGGAACTTTGTAGTGTCAGAATGTCATCCAACTGTATATTTACTTTATTGTAAATAATGGTGAACAGTGGTCAATAAATAGTTTTATATTCCTTTA
>XM_006236484.3
CCCTTTAGGTATAGCGGGACTGGTTTACATGACTTGCGCAACTGGCTTCAGTGAATTGCGGAAGGCTCGTGCTCAGCGTGTTACTACGTCCGGAACTAGGTCCGGCCCCCACCTCCGCGTAGGGAGCCGAGAAACGGTCGCGCAGTTTGAAATTAACGCCGTCGGGAGGGGCTTAGGCTGGAGCTCTGGCGTGCGGCCCTCTCCACCAAAGCGCCCCCTCTGCAGCTACGCCTTTGCCAATCCTGTCTCCGGGTTTTCGAGCCACACAAATAGTTCTACCTGTCCCAAGGGGGCTCCTCACTCGGTCCCTCCCAGAAGGACTTGTAGTCCAAGTACAATCCCCAATGCCAAAAGCCTTGGGAGCCCGCGCCCAGTAAGAGGTGGTGCTTAAAGAACCCGGCTGTTGAGCTCCCCGGCCCTCGAGCTCCGGGTGAGGTGGGCGGAGCCCTGCTTTGGCGCGCTTTGAGACTGAGAAGCCTCCGCCGTCCTGCCTGCCTTCCCCCACCCTCGGGAGACCCCCGGGCGCCACGCAGCGAACGGTGAGCGGCGCGCGCGCCGCCCCCCGCAGGACGCGTCGCGTTCCCGGCGGGCCCCGCGCGGCCAGGGCGTGGGCGGGCCTCCCCTCTTCCCCCCAGCGGAGCTGCCCGCGCCCCCTCCCCTCGGATGTGGCTGAGCTGAAGCGCGCAGGCGGGAGACTCTGCAGGATCCGCGGCCCTGAGCATCTGAGCGGTGAACTCTTCAAGTCTCCGATTAAATTTTAAAAATGGCCTCCAATAAAACTACATTGCAAAAAATGGGAAAGAAACAGAATGGAAAGAGTAAAAAAGTTGAAGAGGCAGAGCCTGAAGAATTTGTGGTAGAAAAAGTACTGGACCGTCGTGTAGTGAATGGGAAGGTGGAGTATTTCCTGAAGTGGAAGGGGTTCACAGATGCTGATAATACTTGGGAACCAGAAGAAAATTTAGATTGTCCAGAATTAATTGAAGCATTTCTTAATTCTCAAAAAGCTGGTAAAGAAAAAGATGGTACAAAAAGGAAATCTTTATCTGACAGTGAATCTGATGATAGCAAATCGAAGAAGAAGAGAGATGCTGCTGACAAGCCCAGGGGCTTTGCCAGGGGCCTTGACCCTGAGCGAATAATCGGTGCCACAGACAGCAGTGGAGAGCTAATGTTTCTCATGAAATGGAAGGACTCAGATGAAGCTGACTTGGTGCTGGCAAAGGAGGCGAATATGAAGTGTCCTCAGATTGTCATCGCCTTCTATGAGGAGAGGCTGACTTGGCATTCTTGTCCCGAAGATGAAGCACAATAATTGTTTGCATTtatatatatatatttatatatatatatatataATCTGGATCTTGGGTTTTGAATTACTAGTGTGGAAAAAATAGCATTCTAATGAAAATCAAGTTTGATATGCTGGTTTTGAAAGTATTGACAGTAGTTGGGATATTTTTGGTTTTTGTTCTGCATCAAAAGGCACTGATTCCTTTGAGCAAGTGAGAGCTTTCTGTAGTTGCTTCCTTTAACAGTAGAATATTTGATACCATGTTGTATTTCCTCAGCTTTGAAGAACAGCTTTTCTTAATTGCTGGGGAGATTTTACAGTCATTACTCAAGTCAGAACTTATTTTTAACTGGGACACAGAAGGACCATTCTGGgtttttttgtttgtttgttcgtatgCAGTGTATGCATAAAACACTTACATAACCTGTCTGTTTTATCTTTTTTTTAATACTCAAAAGAACTGAATGTGAAAACGCAAGTTGATGAGATTCCATCACCGTGAATGTTCTCCTGAAACCATAACCTTTCAGAATAAGCAGAGTCTGTAATTTATTGGATAGTTTATTTACAGAATGTTGTCCATACCAACACCCCTTCAGGAAATGGAATTAGACAACATAGTAGTATGATTTAATAGCAAGACTTGgccgagtatggtggtgtgcacctttaatcccagaactctggaggcagatagagctctgatttaagaggcccctggtctacagaggcaggtctaggtcagTGGGTCTGTGTAAAGGTTCCTCTGGTGAACCATTCCTTTGTAGGACGTTAAAATCTGTACTAAAAGGTTATGATTCATGGAATCTGTTTGATGTGGAAATAGAATCATGGTTGGAGCTGATGTTGGCGATTTAAGACCTGCTGACTAAGTGAGTGAACAAAATTTGCTAATATCAATTAGTGCCCTGCATGCCTTTCCTTTACCCTGACTCATTCCTTACGGGTAGGATCAATCTTTTCAGTATTTGCATTCTGGTTCAATTAGCCAGAAAAGGAACTTTGTAGTGTCAGAATGTCATCCAACTGTATATTTACTTTATTGTAAATAATGGTGAACAGTGGTCAATAAATAGTTTTATATTCCTTTA