Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Pef1
Plot displaying the genomic locations of a parental gene (in chr5) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name penta-EF hand domain containing 1
Also known as Peflin
Coordinate chr5:148320610-148343876
Strand +
Gene summary Predicted to enable several functions, including calcium-dependent protein binding activity; protein heterodimerization activity; and ubiquitin ligase-substrate adaptor activity. Predicted to be involved in several processes, including COPII vesicle coating; mesenchymal cell differentiation; and positive regulation of protein monoubiquitination. Predicted to be located in cytoplasm. Predicted to be part of COPII vesicle coat and Cul3-RING ubiquitin ligase complex. Orthologous to human PEF1 (penta-EF-hand domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Pef1

Retroname Coord Strand Genomic Region ENSG
Pef1P1 chr2:183068096-183069521 + Intergenic
 N/A UCSC
Pef1P2 chr7:15834438-15835918 - Intergenic
 N/A UCSC

Expression

Transcript Sequences

>NM_001007651.1
GTCATAACCGCCATGGCCAGCTATCCAGACGGGCAGAGTTACCCAGGAGCTGCAGGACAGGTACCTGGACCACACCCCGGTGGCTACTATCCTGGACCTCCCCATGGTGGGGGCCAGTATGGCAGTGGATTCCCCCCTGGTGGTTACGGAGCTCCTGCCCCTGGAGGACCCTATGGCTACCCCAGTGCTGGAGGAACCCCCTCTGGAACTCCAGGCGGACCATATGGCGGTGGACCTCCAGGAGGCCCCTATGGTGGTGGACCTCCAGGAGGCCCCTATGGTCAGGCACATCCAAGTCCCTATGGTACCCAGCCGCCTGGACCTTATGGACAGGGTGGCGTCCCCCCCAATGTCGATCCTGAGGCCTACTCCTGGTTCCAGTCAGTGGATGCCGACCACAGTGGCTATATCTCACTCAAGGAGCTGAAGCAGGCCCTGGTCAACTCCAACTGGTCCTCATTCAATGATGAGACGTGCCTCATGATGATAAACATGTTTGACAAGACCAAGACTGGCCGAATTGATGTCGTCGGCTTCTCAGCCTTATGGAAGTTCCTCCAGCAGTGGAAGAACCTCTTTCAGCAGTATGACCGGGACCACTCGGGATCCATCAGCTCCACAGAGCTGCAGCAAGCGCTGTCCCAGATGGGCTACAACCTGAGCCCTCAGTTCACGCAGCTCCTGGTTTCCCGATACTGTACGCGCTCTGCCATTCCCGCCATGCAGCTGGACTGCTTCATCAAGGTGTGTACCCAGCTTCAGGTGTTGACTGAGGCCTTCCGGGAGAAGGATACGGCTGTACAGGGCAACATCCGGCTCAGCTTTGAGGACTTTGTCACCATGACGGCTTCAAGGATGCTATGACCCAGCCTGCCTAAAGGGTGTGGAGCACACCAGGGGATGTGGGCCTCTCCTTTCCTCCTCTCCTAGCAAAAAGTGTTTCCTGGCCTGAGCTAGGAAGGACAGAGGTTGGCTATCCTGGGCTGTGGAGTGGCATGGCCCTGGAGTAGGGGCCCTAGAGTAGCAATGGGTTAGTGTCTGGTCAGCTGTCCTGGCCTCTGGCCTTCCCCCCTTCTCCCTGATGCCAGTGCTAAGTGCTCCTTGGCTGGCCTACCTGTCATCTCTCACTGACCACCAGGTCAGAAGAGCCCAGTTTCTGCACAGTGGAGTCAGACTGAGCGGGAGGGAGATTTGCTGGGACCAGAGCCTGGGATTCTTCAGCTCCCTCAAGCCTTGTATCTTAACATTAATTTTCCTGAAGCTTTGCCTGAGCAAGAAGCTTGGGCATTCTGCCATCTTGGCCATATCTGATGAGGCTCATGACCTCCAAAACTCGGACCCCTCGCTGGCCTGCCACGTTCTACTCAGCTTCCCTCCCCAGGGGCATTGTCACATCCTACTGCCAATGTTGTTTCTAATTTGCTTTTTTTTTCTTTCCCATTTGGGGCCAAAAGTCCAGGAAACTGTAAGAGTCAATAAAAGACTGCAGTCCCATGTT