Summary

Gene Name	Lsm5
Specie	Rattus norvegicus
Full Name	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated
Also known as	-
Coordinate	chr4:87016003-87019219
Strand	-
Gene summary	Predicted to enable protein heterodimerization activity. Predicted to contribute to RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA catabolic process and response to bacterium. Predicted to be located in cytoplasm and nucleus. Predicted to be part of several cellular components, including Lsm1-7-Pat1 complex; Lsm2-8 complex; and spliceosomal snRNP complex. Orthologous to human LSM5 (LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Lsm5

Retroname	Coord	Strand	Genomic Region	ENSG
Lsm5P1	chr1:19292846-19293355	-	Intragenic	N/A	UCSC
Lsm5P2	chr6:108831091-108832998	+	Intragenic	N/A	UCSC
Lsm5P3	chr10:83282239-83282453	-	Intragenic	N/A	UCSC
Lsm5P4	chr16:2061594-2062094	+	Intergenic	N/A	UCSC
Lsm5P5	chrX:105325955-105326204	+	Intergenic	N/A	UCSC

Expression

Transcript Sequences

>NM_001107289.1

GCGCTATTTTAAAGTCTGCGCCGGTGTCCTTATGCCACTTCCGGCGTGGCCATGGCGGCTAACGCGACCACGAACCCGTCTCAACTCCTGCCACTAGAGCTTGTGGACAAGTGTATAGGATCAAGAATTCACATTGTGATGAAGAGTGATAAAGAAATCGTGGGTACACTTCTAGGATTTGATGACTTTGTCAATATGGTGTTGGAAGATGTCACAGAGTTTGAAATTACACCAGAAGGAAGAAGAATTACAAAATTAGATCAAATTCTACTAAATGGAAATAATATAACAATGCTGGTTCCTGGAGGAGAAGGGCCTGAAGTATGAGTGGATTTCCTTGACTTATGCTGGATTCTGGCTTTGTGTTTTTCAAACCTTTAATGTTTAGATTCTATAAAATGAAGTTTCCGTTAAAGGGAAACACTTTGAAGATATACATCCATTTTTCTAAGCTAATCATGGTTATTTTGGGAAAAGAAGAGTTTTGTTTTGTCTTGTTTTTTTAAAGACTAAAAAAATAAAGATGGTTTTGGTTAACT