Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Psip1
Plot displaying the genomic locations of a parental gene (in chr5) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name PC4 and SRSF1 interacting protein 1
Also known as Ledgf|Psip2|SBP75
Coordinate chr5:101555691-101588659
Strand -
Gene summary Enables supercoiled DNA binding activity. Predicted to be involved in several processes, including mRNA 5'-splice site recognition; positive regulation of transcription by RNA polymerase II; and response to heat. Located in heterochromatin and transcriptionally active chromatin. Orthologous to human PSIP1 (PC4 and SFRS1 interacting protein 1). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Psip1

Retroname Coord Strand Genomic Region ENSG
Psip1P1 chr15:12687721-12690675 + Intergenic
 N/A UCSC
Psip1P2 chrX:13518941-13521265 - Intergenic
 N/A UCSC
Psip1P3 chrX:13521264-13521757 + Intergenic
 N/A UCSC

Expression

Transcript Sequences

>NM_175765.2
GGGCCCGCCAGTCCCAGCTCGCGTCGGTGCTCGCATCTACTGATCGCGGCTGCGCTGCTCCCCCTTCTGGTCTTGGGACTCCCGGCGTCGCCCCTCAAACATGACTCGCGATTTCAAACCTGGAGACCTCATCTTCGCCAAGATGAAAGGTTATCCTCATTGGCCAGCTCGAGTAGATGAAGTTCCTGATGGAGCTGTAAAACCACCCACAAACAAACTACCCATTTTCTTTTTTGGAACCCACGAGACTGCTTTTTTAGGACCAAAGGACATATTTCCTTATTCAGAAAATAAGGAAAAGTATGGCAAACCAAATAAACGAAAAGGTTTTAATGAAGGATTGTGGGAGATAGATAACAATCCAAAAGTGAAATTTTCAAGTCAACAGGTATCAACCAAACAGTCAAATGCATCATCTGATGTTGAAGCGGAAGAAAAAGAAACTAGTGTTTCAAAGGAAGATACTGATCAGGAAGAAAAAGCCAGCAATGAAGATGTGACTAAAGCAGCTGACATAACCACTCCAAAAGCTGCCAGGCGAGGAAGAAAGAGAAAGGCTGAAAAACAAGTAGACACTGAAGAGGCAGGAGTGGTGACTGCAGCGACCGCTTCCAATGTGAAAGCAAGTCCTAAGAGAGGACGGCCTGCAGCTACTGAAGTCAAGATTCCAAAACCAAGAGGCAGACCTAAAGTGGTAAAACAGCCCTGTCCGTCAGAAAGTGACATGGTTATTGATGAAGACAAAAGTAAAAAAAAGGGGCCAGAGGAAAAACCACCCAAAAAGCAGCTTAAAAAGGAGGAAGAAGGCCAaaaggaagaagagaagccaagaaaagaaccagataagaaagaggggaagaaagaaGTCGAATCTAAACGGAAAAATTTAGCTAAACCAGGGGTTACGTCAACCTCTGATTCAGAAGAAGATGATGATCAAGAAGGTGAAAAGAAGAGAAAGGGTGGAAGAAACTTCCAGGCTGCTCACAGGAGGAACATGCTAAAAGGCCAACATGAGAAAGAAGCTGCAGATCGGAAACGCAAGCAGGAGGAACAAATGGAGACTGAGCAGCAGACTAAAGATGAAGGAAAGAAGCCAGAAGTTAAGAAAGTGGAGAAGAAGCGAGAAACATCAATGGATTCTCGACTTCAAAGGATACATGCTGAAATTAAAAATTCACTCAAAATTGATAATCTAGATGTGAACAGATGCATTGAGGCACTGGATGAACTCGCTTCACTTCAGGTAACAATGCAACAAGCTCAGAAACACACAGAGATGATCACAACCCTGAAGAAAATCCGGCGGTTCAAAGTCAGTCAAGTTATCATGGAGAAGTCTACAATGTTGTATAACAAGTTTAAGAATATGTTTTTGGTTGGTGAAGGGGATTCCGTCATCACCCAAGTGCTAAACAAATCTCTTGCTGAACAAAGACAGCATGAGGAAGCAAATAAAACCAAAGATCAAGGGAAGAAAGGGCCAAACAAAAAGCTAGAAAAGGAACAAACAGGTACAAAGAGCCTAAATGGAGGATCTGATGCTCAGGAAAGTAATCATCCACAACATAATGGTGACAGTGCGGAAGAAAGCAAAGACAGCCGTGAGGCCGGCAGTAAGACAAAGACACCTGGAGAAGAGAGAGAGGCTGAAGTATCTCTGAAGGAGTCTACCCTAGATAACTAGGTCTGCAGACTTCAGATGTAAAGAGTGTGAGAAGTCTGTTGTGAGTGGCTTCATTTGAAATACTTAGGCTGCTGAAAGGTTTAAAGTTTTATAAGCATAGGTTTTGATGTTTAAGTAGTTGGGGGATAGAAAAACCCTTTATATTTGTGTAAAAGTCAATTATTGCTAATTTTCTGTGTGCAGTATTAACAGCTCCGCCATCTAGTTTGAGTAAGGAAACCTACTTAGAAAGGTTAACCTGCTTTATAGACATGACTGTAGTGAATTTTTGGTTAGTGTGTCAATGTGTAATTAGTAGTAGGGCAGTTACATTTTAAAACTGCTACTTGTATAAATCTTTCCTCTTTTCCCAAATACTGTGCGTTTTGTGCATAGTTTTTACAAATATTGGATTTACCAGACTGTCTTTTCACTGTGTGGGTGTTTTAGAAGTTGAGCATTTTTATGGATGATAAAATGAATGTTACTTCTAAGTACTCACTCCCTTTTATCAACAGTTATAACCTCAGTCCATTGTGCTACATTAGCGTGCCTCTTTGTAATAATGTGTAGTATGACAGCTAGATGCCTATTGGGTTGTTATAGAAGGTACAAATTTGTTTACTTTTAAAAGTAATTTAGTTTTAGGACTGGGATTTCAGTGGTGTTAGAACTAGAGAGAACAGACTGGTTATATATACATATAGGAAGTCCATCTACAATCCTTTATAAAGGTACTAATCACACAAACCTAAAATTAGTTTGTTTTAATCTTATACTCATTAAGGTGTGTTTTTTTTTCTTTCTTTTTTAATTAGAATCAATCCATGATGCTTATAAGTAATAAATAAGGAAATTAACCTAATTGAAGACATG
>XM_006238354.3
agcgggcgccgagcgggagccgcgcgggagcggCGCAGCGACATCGGCGGCAGTGGCGGTGGCGGTTGCAGCTCGGAGCCGTTGAGACGCCTCTGCGGCAGCTGGTGGCGCAGGTGGCCGGCGTGGACGTGGGCAGAagcggccagcgcgccccgcagccccagcgccaccgccCGGCAGGCGCGTCGGGACACCCCGAGGCATCCTCCCCCGCCCGCGGGCCCGCCAGTCCCAGCTCGCGTCGGTGCTCGCATCTACTGATCGCGGCTGCGCTGCTCCCCCTTCTGGTCTTGGGACTCCCGGCGTCGCCCCTCAAACATGACTCGCGATTTCAAACCTGGAGACCTCATCTTCGCCAAGATGAAAGGTTATCCTCATTGGCCAGCTCGAGTAGATGAAGTTCCTGATGGAGCTGTAAAACCACCCACAAACAAACTACCCATTTTCTTTTTTGGAACCCACGAGACTGCTTTTTTAGGACCAAAGGACATATTTCCTTATTCAGAAAATAAGGAAAAGTATGGCAAACCAAATAAACGAAAAGGTTTTAATGAAGGATTGTGGGAGATAGATAACAATCCAAAAGTGAAATTTTCAAGTCAACAGGTATCAACCAAACAGTCAAATGCATCATCTGATGTTGAAGCGGAAGAAAAAGAAACTAGTGTTTCAAAGGAAGATACTGATCAGGAAGAAAAAGCCAGCAATGAAGATGTGACTAAAGCAGCTGACATAACCACTCCAAAAGCTGCCAGGCGAGGAAGAAAGAGAAAGGCTGAAAAACAAGTAGACACTGAAGAGGCAGGAGTGGTGACTGCAGCGACCGCTTCCAATGTGAAAGCAAGTCCTAAGAGAGGACGGCCTGCAGCTACTGAAGTCAAGATTCCAAAACCAAGAGGCAGACCTAAAGTGGTAAAACAGCCCTGTCCGTCAGAAAGTGACATGGTTATTGATGAAGACAAAAGTAAAAAAAAGGGGCCAGAGGAAAAACCACCCAAAAAGCAGCTTAAAAAGGAGGAAGAAGGCCAaaaggaagaagagaagccaagaaaagaaccagataagaaagaggggaagaaagaaGTCGAATCTAAACGGAAAAATTTAGCTAAACCAGGGGTTACGTCAACCTCTGATTCAGAAGAAGATGATGATCAAGAAGGTGAAAAGAAGAGAAAGGGTGGAAGAAACTTCCAGGCTGCTCACAGGAGGAACATGCTAAAAGGCCAACATGAGAAAGAAGCTGCAGATCGGAAACGCAAGCAGGAGGAACAAATGGAGACTGAGCAGCAGACTAAAGATGAAGGAAAGAAGCCAGAAGTTAAGAAAGTGGAGAAGAAGCGAGAAACATCAATGGATTCTCGACTTCAAAGGATACATGCTGAAATTAAAAATTCACTCAAAATTGATAATCTAGATGTGAACAGATGCATTGAGGCACTGGATGAACTCGCTTCACTTCAGGTAACAATGCAACAAGCTCAGAAACACACAGAGATGATCACAACCCTGAAGAAAATCCGGCGGTTCAAAGTCAGTCAAGTTATCATGGAGAAGTCTACAATGTTGTATAACAAGTTTAAGAATATGTTTTTGGTTGGTGAAGGGGATTCCGTCATCACCCAAGTGCTAAACAAATCTCTTGCTGAACAAAGACAGCATGAGGAAGCAAATAAAACCAAAGATCAAGGGAAGAAAGGGCCAAACAAAAAGCTAGAAAAGGAACAAACAGGTACAAAGAGCCTAAATGGAGGATCTGATGCTCAGGAAAGTAATCATCCACAACATAATGGTGACAGTGCGGAAGAAAGCAAAGACAGCCGTGAGGCCGGCAGTAAGACAAAGACACCTGGAGAAGAGAGAGAGGCTGAAGTATCTCTGAAGGAGTCTACCCTAGATAACTAGGTCTGCAGACTTCAGATGTAAAGAGTGTGAGAAGTCTGTTGTGAGTGGCTTCATTTGAAATACTTAGGCTGCTGAAAGGTTTAAAGTTTTATAAGCATAGGTTTTGATGTTTAAGTAGTTGGGGGATAGAAAAACCCTTTATATTTGTGTAAAAGTCAATTATTGCTAATTTTCTGTGTGCAGTATTAACAGCTCCGCCATCTAGTTTGAGTAAGGAAACCTACTTAGAAAGGTTAACCTGCTTTATAGACATGACTGTAGTGAATTTTTGGTTAGTGTGTCAATGTGTAATTAGTAGTAGGGCAGTTACATTTTAAAACTGCTACTTGTATAAATCTTTCCTCTTTTCCCAAATACTGTGCGTTTTGTGCATAGTTTTTACAAATATTGGATTTACCAGACTGTCTTTTCACTGTGTGGGTGTTTTAGAAGTTGAGCATTTTTATGGATGATAAAATGAATGTTACTTCTAAGTACTCACTCCCTTTTATCAACAGTTATAACCTCAGTCCATTGTGCTACATTAGCGTGCCTCTTTGTAATAATGTGTAGTATGACAGCTAGATGCCTATTGGGTTGTTATAGAAGGTACAAATTTGTTTACTTTTAAAAGTAATTTAGTTTTAGGACTGGGATTTCAGTGGTGTTAGAACTAGAGAGAACAGACTGGTTATATATACATATAGGAAGTCCATCTACAATCCTTTATAAAGGTACTAATCACACAAACCTAAAATTAGTTTGTTTTAATCTTATACTCATTAAGGTGTGTTTTTTTTTCTTTCTTTTTTAATTAGAATCAATCCATGATGCTTATAAGTAATAAATAAGGAAATTAACCTAATTGAAGACATGGCCATATTGTAATGGGATTTTTGTTTCTCTATCAAACATAATCAGATGATTACAGAAAAAACAAACATCAGTTGTTCCAAGGTAGTAACCAGATAGTCCATATACACAAACATGGACTATTGCTCTGTTAAATTAAGGCATAACATTTCAAAGATATTCTGAGTAATCAGGTCAGTTGTTGGTCTCTGGTAGGTAGAAAAGTTTATCCTTATGCTTTGAAATTTTGTAGGAAGGTGACTTAATACCAGTGTTTCTGTGCGATACGATTAAATATGTTCTTGATTTCTCAGATAGTTATTTTTACCTATGTAAAACTTTAATTACTCCAATTGGACTTTGCTTTGATAGCTCTTACAATTCACTACTGTTTTGAGCAAGTGCTGTACATTATTTACGCCAGTCTTCTGTTTTGTCCTTAGTACATTTTTAACTTGGACAAAAATTATCCTAGTTAAGCCATAAGTGTCAATGTGTAAATTGTTTTAATTAAAAGGTTTTTCTACCAAA
>XM_017593366.1
gcgggcgccgagcgggagccgcgcgggagcggCGCAGCGACATCGGCGGCAGTGGCGGTGGCGGTTGCAGCTCGGAGCCGTTGAGACGCCTCTGCGGCAGCTGGTGGCGCAGGTGGCCGGCGTGGACGTGGGCAGAagcggccagcgcgccccgcagccccagcgccaccgccCGGCAGGCGCGTCGGGACACCCCGAGGCATCCTCCCCCGCCCGCGGGCCCGCCAGTCCCAGCTCGCGTCGGTGCTCGCATCTACTGATCGCGGCTGCGCTGCTCCCCCTTCTGGTCTTGGGACTCCCGGCGTCGCCCCTCAAACATGACTCGCGATTTCAAACCTGGAGACCTCATCTTCGCCAAGATGAAAGGTTATCCTCATTGGCCAGCTCGAGTAGATGAAGTTCCTGATGGAGCTGTAAAACCACCCACAAACAAACTACCCATTTTCTTTTTTGGAACCCACGAGACTGCTTTTTTAGGACCAAAGGACATATTTCCTTATTCAGAAAATAAGGAAAAGTATGGCAAACCAAATAAACGAAAAGGTTTTAATGAAGGATTGTGGGAGATAGATAACAATCCAAAAGTGAAATTTTCAAGTCAACAGGTATCAACCAAACAGTCAAATGCATCATCTGATGTTGAAGCGGAAGAAAAAGAAACTAGTGTTTCAAAGGAAGATACTGATCAGGAAGAAAAAGCCAGCAATGAAGATGTGACTAAAGCAGCTGACATAACCACTCCAAAAGCTGCCAGGCGAGGAAGAAAGAGAAAGGCTGAAAAACAAGTAGACACTGAAGAGGCAGGAGTGGTGACTGCAGCGACCGCTTCCAATGTGAAAGCAAGTCCTAAGAGAGGACGGCCTGCAGCTACTGAAGTCAAGATTCCAAAACCAAGAGGCAGACCTAAAGTGGTAAAACAGCCCTGTCCGTCAGAAAGTGACATGGTTATTGATGAAGACAAAAGTAAAAAAAAGGGGCCAGAGGAAAAACCACCCAAAAAGCAGCTTAAAAAGGAGGAAGAAGGCCAaaaggaagaagagaagccaagaaaagaaccagataagaaagaggggaagaaagaaGTCGAATCTAAACGGAAAAATTTAGCTAAACCAGGGGTTACGTCAACCTCTGATTCAGAAGAAGATGATGATCAAGAAGGTGAAAAGAAGAGAAAGGGTGGAAGAAACTTCCAGGCTGCTCACAGGAGGAACATGCTAAAAGGCCAACATGAGAAAGAAGCTGCAGATCGGAAACGCAAGCAGGAGGAACAAATGGAGACTGAGCAttttgctctgtaaagcatttcagatgcaacttgtgtgaaatgcattatgcaaaataaagtttattgtattGTATTCCCAGCCAAACAACATGTAATCTACAGTAATAAAAATATATCTCATTTTGGGCTCAAAGCATTAATCCAGTAACTGAAAAGAGAATACGAGTGGAGCATACAAGCGATGAAGATCTTGAGACAGACTCATTGGACTGAATTTTCCCCTCCCCCCTTGATGGAAGAAATGTTCCAGATTCTAAATTGAGGACTTCACTATTAATGGCATTATTAACTGTGTTATGATTGTTAACAAAATATCCTGTAAGGTACACACTACATATTAAGGTTGGCCATCATTCCTGTTTTTTTTTTTAGCCAAGCTTAAAATGAAGCTTTGTGTTTGAAGTTATAACAAACATAGATGAAGTCGGTGGTTGTACATTATTTCATTTAGAAAATATGAAAACTCATTTTGTTTTGAAGATAGGTATTAAACTGAAATAGCTATTACGTTCTTGAAAAATGGGGCAGGTGTGCCCTTCCCTTGACATTCTTTTGTTGTTAAGTTCTTTAGAGTCTTGTTTTTTTTTTTCTTTTTAATCCTGAGAGATTAAACAGTAGACTTGTTAAGTAAAAATATGAAACTGTAACCAAAATTTTAAAATAAAGTTTTTTTTAAAAAAAAAA