Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Upf3b
Plot displaying the genomic locations of a parental gene (in chrX) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name UPF3B, regulator of nonsense mediated mRNA decay
Also known as RGD1560264
Coordinate chrX:123713327-123731431
Strand -
Gene summary Predicted to enable mRNA binding activity. Predicted to be involved in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay and positive regulation of translation. Predicted to be located in centriolar satellite; cytosol; and nucleoplasm. Predicted to be part of exon-exon junction complex. Predicted to be active in cytoplasm and nucleolus. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 82 and syndromic X-linked intellectual disability 14. Orthologous to human UPF3B (UPF3B regulator of nonsense mediated mRNA decay). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Upf3b

Retroname Coord Strand Genomic Region ENSG
Upf3bP1 chr13:32000558-32001398 + Intergenic
 N/A UCSC

Expression

Transcript Sequences

>NM_001135873.1
GGGCTATTTGTTGTGGGCGGAGCTCCTGAGGGCTCTACCCTAGAGTCATAGGTGCCCGGCGTAACGGCTTAGCAGCTGTGCCACCGCTCTTAAGAGCGTCACCGTGGCCATGAAGGAAGAAAAAGATCATAGGCCTAAGGAGAAACGAGTGACCCTGTTAACGCCTCAGGGCGCTACAGGCGGCTGCATTGGAGCTACCGCAGAAGGCGCCAAAGGGGACGATAGGCAAGATCGCAACAGGGACAAGAAAGAAGCTTTGAGCAAGGTCGTAATTCGAAGATTACCTCCCACTCTGACCAAGGAGCAGCTTCAGGAACATCTTCAACCTATGCCTGAGCATGATTATTTTGAGTTTTTTTCCAATGATACTAGTCTTTATCCTCATATGTATGCCAGAGCATATATCAACTTTAAAAACCAAGAGGACATTCTTTTATTCAGGGACCGATTTGATGGCTATGTATTCCTTGACAATAAAGGTCAGGAATATCATGCTATAGTAGAATTTGCACCATTTCAAAAAGCTGCAAAAAAGAAGATTAAGAAAAGAGATACAAAAGTTGGGACTATCGAGGATGATCCAGAATACAGAAAATTTTTGGAGAGTTATGCCACAGACAATGAGAAAATGACATCTACTCCAGAGACATTGCTGGAAGAAATTGAAGCCAAAAATCGAGAATTAATAGCTAAAAGGACAACCCCACTTTTGAGCTTCCTGAAGAACAAGCAGagaatgagagaagaaaagagagaagagaggaggagacgggaaatagagaggaaaagacaaagagaagaagagagaagaaaatggaaagaagaggagaaacgaaaaagaaaagatatagaaaaactaaagaagatagaaagaaTTCCAGAAAGGGAAAAGATAAGGGATGAACCAAAGATTAAGCTGCTCAGGAAACCAGAAAAAGGAGATGAAAAGGAACTTGATAAAAGAGACAAAACCAAGAGACTGGACAAAGAAAATCTGAATGAAGACAGAGCCAGTGGGCACAGTTATACTCTGCCCAGGCGTTCTGATGTCGAACTGAAGGATGAAAAACCAAAGAGGCCTGATGACGAGAGTGTCAGAGACTACAGAGATAGGGACCGGGATTATGAAAGAGATCAGGAGCGCATGATCCGAGAAAGAGAGAGGATGAAGCGGCAGGAAGAAGAGCGCCGGAGGCAGCAGCAGAAGGAGCGCTATGAGAAAGAGAAGGCTTTTAAGCGAAAGGAAGAAGAAATGAAGAGAGAGAAAGAAGCACTTCGAGATAAAGGAAAGAAGAGTGAGAATACAGAATCAATATGCTCGTTAGAAAAAATTGAAAAAAAAGAGGAAGTGGTTAAGAGAGATCGCATAAGGAACAAGGATCGTCCAGCAATGCAGCTTTACCAACCAGGGGCTCGAAGCCGAAGTCGACTCTGTCCCGCCGATGACAGCATCAAGCCTGGAGATTCCCCAGTGGAGAAAAAGCAGGAAAGTGGTATTAGCCATAGAAAAGAAGGAGGAGAGGAGTGAGAAGTCCAAATGGCCATAGGTGTCCTGACTGTCCAGGCAGCCAGAGTGCACCTGGCTATGCTGTCCAGAAGTGCCTTCAGGGCAGAGGAACAGAGAACAAGAAAAGGGGTCGCTGTGCTGGTGGGGCACTACAGAGGAGTGTGTCTAAGCAGAATAAGATTGCAGGCGCAGAATCAAAGGACAATTTCATTGTTTTCTGCAGTTTCCACAAGTTAATTTTAATGTCTCAGAAAAAGATGGTAGCAAGGATATTGCAAGTGAAAAATGTCAAATAAGGGCTTAACTTTGTTATGACAGCTAAAAAGAGCAGGTTCGAAACTCAACAGGTGTCTTAATCCTGGCTTGGCGCGCCTTAGTTCGAGTGGAGCAGGAGCACACTAAGTCTTGTTGGGATCTAACTTTTGCATTGTTGGTGTTGACTCTGTAGTGTAGAAGCAACAAGCATGTAATTGTAGCACAAGTAGGAGCAGAAGGTAGAGCAAATAATGGCTGATGGAAAGGATTTAAATAGTCTCGTTACATCTATATCCTGTGTCTGAAGTTTGCGTAATTACAGCTTGTTTTACTTCTGTGAACTTAGCATCAAAAATACTTGTAAACATCTCGTTTTTGCCTTTAGCATCTTTTCCTGTTAATAGATAAAATGTAGTCCTTGGTTAGTTACTGATAATCTAGTCTTTGTTTTACCTTAGGTCTGATGATTTGAGTGAATACCCTCTTCAGGAAGCAAACTACACCAATATCTGTTCCTGTCATGGCAGCTTTCAGTCTTAGCTTGTTTTGTAATGCTGTCAATAAATTTCTACTTCATTCAAGTGTGAA