Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Sf3a3
Plot displaying the genomic locations of a parental gene (in chr5) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name splicing factor 3a, subunit 3
Also known as LRRGT00093
Coordinate chr5:142702721-142722350
Strand +
Gene summary Predicted to enable RNA binding activity. Predicted to be involved in U2-type prespliceosome assembly. Predicted to be located in nuclear speck. Predicted to be part of U2 snRNP; U2-type precatalytic spliceosome; and catalytic step 2 spliceosome. Orthologous to human SF3A3 (splicing factor 3a subunit 3). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Sf3a3

Retroname Coord Strand Genomic Region ENSG
Sf3a3P1 chr5:4531174-4531362 - Intergenic
 N/A UCSC
Sf3a3P2 chr5:4531361-4531632 + Intergenic
 N/A UCSC
Sf3a3P3 chr7:132004579-132005098 + Intergenic
 N/A UCSC
Sf3a3P4 chrX:73639184-73639600 - Intergenic
 N/A UCSC

Expression

Transcript Sequences

>NM_001025698.1
GGCGGCAGGCAGTGTTTCCGGCAGTGTTAGCGGTCTGAATTGAAGTACCGCGGCCAAGAGAAAATGGAGACAATTTTAGAGCAGCAACGGCGCTATCATGAGGAGAAAGAACGGCTTATGGATGTTATGGCCAAAGAAATGCTCACTAAGAAGTCCACGCTCCGGGACCAGATCAATTCCGATCACCGCACTAGGGCCATGCAAGATAGATACATGGAGGTCAGTGGGAACCTGAGGGATTTGTATGATGATAAGGATGGATTACGAAAGGAGGAGCTCAATGCTATTTCAGGACCCAATGAGTTTGCTGAATTCTATAACAGACTGAAGCAGATAAAGGAATTTCATCGGAAGCACCCAAATGAGATCTGTGTGCCAATGTCGGTGGAATTCGAGGAGCTCCTGAAAGCTCGAGAGAATCCAAGTGAAGAGGCACAAAACTTGGTGGAGTTTACAGATGAAGAGGGATATGGTCGCTACCTTGATCTCCATGACTGCTACCTCAAGTACATTAACCTGAAGGCATCTGAGAAGCTGGATTACATCACATACCTGTCCATCTTCGATCAGTTATTTGACATTCCGAAAGAAAGAAAGAATGCAGAGTATAAAAGATACCTGGAGATGCTGCTGGAGTACCTACAGGATTACACAGATAGAGTGAAGCCCCTTCAGGATCAGAACGAGCTCTTTGGGAAGATTCAGACCGACTTTGAGAAGAAGTGGGATAATGGCACCTTCCCTGGATGGCCGAAAGAGACAAGCAGTGCCCTGACTCACGCGGGAGCCCATCTTGATCTCTCCGCATTCTCCTCCTGGGAGGAGTTGGCATCCCTGGGTCTGGACAGATTGAAATCTGCACTGTTGGCTTTAGGCCTGAAGTGTGGTGGGACCCTAGAAGAACGAGCTCAGAGACTCTTCAGCACCAAAGGAAAGTCCTTGGAGTCGCTCGACACCTCTCTGTTTGCCAAAAATCCCAAGTCAAAGGGCACAAAGAGAGACACTGAGAGGAACAAAGACATTGCTTTCCTGGAAGCCCAGATCTATGAATATGTGGAGATTCTTGGGGAACAGCGACAGCTCACTCATGAAAATGTACAGCGCAAGCAAGCCAGGACAGGTgaggagcgggaggaggaggaagaagagcagATCAGCGAGAGCGAAAGTGAGGACGAAGAGAATGAAATCATTTACAACCCCAAAAACCTGCCTCTGGGCTGGGACGGCAAACCCATCCCCTACTGGCTGTACAAGCTCCACGGCCTGAACATCAACTACAACTGTGAGATCTGCGGGAACTACACTTACCGAGGGCCGAAGGCCTTCCAGCGGCACTTCGCTGAATGGCGTCATGCTCATGGCATGAGGTGTTTGGGCATCCCAAACACTGCCCACTTTGCAAATGTGACACAGATTGAAGATGCTGTCTCCTTGTGGGCCAAGCTGAAACTGCAGAAGGCTTCAGAACGATGGCAGCCTGACACCGAGGAAGAATATGAAGACTCCAGTGGAAATGTTGTGAACAAGAAGACATACGAGGATCTGAAAAGACAAGGACTGCTCTAGTGGTTGGCCATGCCTGGGCTTCCGTGAGAAGCCTGAGAAAATTTTTCCCAACCAAATGTTCTTAAAGACTTTTTGCTATGTAGTATCTACCTTGTAGGAAGAAGACATGCTGACAGATTGCAGAATTGAGATGTGTTTTATCTTTGTTTTATATTAAAAAGATTTGTGGGAAAATAAAA