Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Traf7
Plot displaying the genomic locations of a parental gene (in chr10) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name TNF receptor associated factor 7
Also known as RGD1559653
Coordinate chr10:13874444-13893090
Strand -
Gene summary Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in several processes, including Notch signaling pathway; regulation of signal transduction; and ribosomal large subunit assembly. Predicted to act upstream of or within several processes, including cellular response to interleukin-6; positive regulation of MAPK cascade; and positive regulation of protein sumoylation. Predicted to be located in several cellular components, including cytosol; nucleus; and perinuclear region of cytoplasm. Predicted to be part of ubiquitin ligase complex. Predicted to be active in nucleolus. Orthologous to human TRAF7 (TNF receptor associated factor 7). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Traf7

Retroname Coord Strand Genomic Region ENSG
Traf7P2 chr3:34805281-34806967 + Intergenic
 N/A UCSC
Traf7P1 chr1:123078466-123081085 + Intergenic
 N/A UCSC

Expression

Transcript Sequences

>XM_006245983.3
TAGAGTTCCTGAAGTCGGTGAACTACAAGTTCCGACGTGCACAGTGCCCGGGGACTTCCGGCTCCTGTATCCTGTACCTTTCCCGGCCCCGGGCCGAGAGGGGCAAGATGATGCCGGAGGGTGTAGCCGCTGCTCCCAGGCAGCTGCGGGCGGGGGACACTGCCCAAGGACCCTGGATGCCTCTCTAGAGCATGAGCTCAGCCAAGAGTGCCCGCTACAACCGCTTCTCCGGGGGGCCTGCCAACCTTCCTGCCTCAGACAGCAGTGGGACCAGGATGGAAACAACCTTTGGGCCTACCTTTTCGACCGTCACCACCATTACCAAAGCAGCTGATGGGACCAGCACATACAAACAGCATCGCAGGACGCCTTCCTCCTCTAGCACCCTTGCCTATTCGCCACGGGATGAGGAGGACGGCATGCCCCCCATCAACACTCCTCGCCGCTCTGACTCAGCCATCTCTGTCCGCTCCCTGCACTCCGAGTCCAGCATGTCCCTGCGCTCCACGTTCTCGCTGCCTGAGGAGGAAGAGGAGCCGGAGCCATTGGTGTTTGCGGAGCAGCCCTCGGTGAAGCTGTGCTGCCAGCTCTGCTGCAGTGTGTTCAAGGACCCTGTGATCACTACGTGTGGGCACACCTTCTGCAGACGATGCGCCTTGAAGTCAGAGAAGTGTCCTGTGGACAATGCCAAGCTGACAGTGGTGGTAAACAACATTGCAGTAGCTGAGCAGATTGGAGAGCTCTTCATACATTGTCGGCATGGCTGCCGTGCAGCAGGCACTGGGAAGCCCGGTGTCTTTGAGGTAGACCCAAGGGGCTGCCCCTTCACCATCAAGCTTAGTGCCCGGAAGGACCACGAGAGTAGTTGTGACTACAGGCCTGTGCGCTGCCCCAACAACCCCAGCTGCCCACCCCTTCTCAAGATGAACCTCGAGGCCCACCTGAAAGAATGCGAGCACATCAAGTGTCCCCACTCTAAGTGCACATTTATTGGGAATCAGGACACCTATGAGACGCACTTAGAAACATGTCGCTTTGAGGGCCTGAAGGAATTCCTGCAGCAGACCGATGACCGCTTCCACGAGATGCATGTGGCACTGGCCCAGAAGGACCAGGAGATTGCCTTTCTGCGTTCCATGCTGGGCAAACTCTCAGAGAAGATTGACCAGCTGGAGAAAAGCCTTGAGCTCAAGTTCGATGTCCTCGATGAGAACCAGAGCAAGCTCAGTGAGGACCTCATGGAATTCCGGAGGGATGCATCCATGTTGAATGATGAGCTGTCTCATATCAATGCACGCCTGAACATGGGTATCCTGGGATCCTATGATCCTCAGCAGATCTTCAAGTGCAAAGGGACCTTCGTGGGACACCAGGGCCCTGTCTGGTGTCTCTGTGTCTACTCCATGGGTGACCTGCTCTTCAGTGGCTCTTCTGACAAGACGATCAAGGTGTGGGACACGTGTACCACTTACAAGTGCCAAAAGACACTGGAAGGTCATGACGGTATTGTGCTGGCGCTCTGTATCCAGGGGTGCAAACTGTACAGTGGGTCTGCAGACTGCACCATCATTGTATGGGACATCCAGAACCTGCAGAAGGTGAACACCATCCGGGCCCATGACAACCCTGTGTGCACACTGGTGTCTTCCCATAACATGCTCTTCAGTGGCTCCCTTAAAGCCATCAAGGTCTGGGACATCGTGGGCACTGAGCTAAAGTTGAAGAAGGAACTCACAGGCCTCAACCACTGGGTGCGGGCCTTGGTGGCAGCACAGAGCTATCTGTACAGTGGCTCTTACCAGACAATCAAGATCTGGGACATTCGGACCCTTGACTGCATCCATGTCCTGCAGACATCTGGTGGCAGTGTGTATTCCATTGCTGTGACGAATCACCACATTGTCTGTGGCACCTATGAGAACCTCATTCATGTATGGGACATTGAATCCAAAGAGCAGGTGCGGACCCTAACGGGCCATGTGGGCACAGTATATGCCCTGGCAGTCATTTCAACACCAGACCAGACCAAAGTCTTCAGCGCATCCTATGACCGCTCCCTCAGGGTCTGGAGCATGGACAACATGATCTGCACACAGACGCTGCTGCGCCATCAGGGCAGTGTAACTGCACTGGCTGTCTCCCGGGGCCGGCTCTTCTCGGGGGCTGTGGATAGCACCGTGAAGGTTTGGACATGCTAACAGAATCCAGGCCAGGCTTGACTCCTTCTGGGTCTGTAAGTCAGGCTGGACCTCCATGATGGCCTTGGAATGTCCGCCTGTCCTGTGGAGACAGGTAGACAGGCTCAAACAGCTAGGCAGTGTCCTCTCTGCCTCTGCTCAGTGCGGGGTCTTTCATAAGGCCTCACTCTTACTTCTACCAGAGAAATGCCCAGGCCCTGCTCTGGGCGCCAGGTACGATGCTTGCCCGGCCCCACCATTCATATCACTCCATAGACttttgttttgagacagggtctcactatgtagctctggcttgcctggaactcactgtcaaccaggctggcctcaaactcacagatctgcctgcctccacctcccaagtgctgggagtaaaggcatgtgccaccgcccctggctGGACCCAGATGGACCATGGGTCCTTTTTACTCACCTTTTCTACTGGTTTTAGACTGTATATAGATTTTATTACTTCCCTGTTGAAATAAAAGCTGCACAGACTGTG
>XM_008767586.2
CCTAGAGTTCCTGAAGTCGGTGAACTACAAGTTCCGACGTGCACAGTGCCCGGGGACTTCCGGCTCCTGTATCCTGTACCTTTCCCGGCCCCGGGCCGAGAGGGGCAAGATGATGCCGGAGGGTGTAGCCGCTGCTCCCAGGCAGCTGCGGGCGGGGGACACTGCCCAAGGACCCTGGATGCCTCTCTAGAGCATGAGCTCAGCCAAGAGTGCCCGCTACAACCGCTTCTCCGGGGGGCCTGCCAACCTTCCTGCCTCAGACAGCAGTGGGGTAAGAGAAGAGCCTGTAGGATGGAAACAACCTTTGGGCCTACCTTTTCGACCGTCACCACCATTACCAAAGCAGCTGATGGGACCAGCACATACAAACAGCATCGCAGGACGCCTTCCTCCTCTAGCACCCTTGCCTATTCGCCACGGGATGAGGAGGACGGCATGGGCTCAACCCCCTGACAGGCTGCCTCCATCTGTGCAGCCCCCCATCAACACTCCTCGCCGCTCTGACTCAGCCATCTCTGTCCGCTCCCTGCACTCCGAGTCCAGCATGTCCCTGCGCTCCACGTTCTCGCTGCCTGAGGAGGAAGAGGAGCCGGAGCCATTGGTGTTTGCGGAGCAGCCCTCGGTGAAGCTGTGCTGCCAGCTCTGCTGCAGTGTGTTCAAGGACCCTGTGATCACTACGTGTGGGCACACCTTCTGCAGACGATGCGCCTTGAAGTCAGAGAAGTGTCCTGTGGACAATGCCAAGCTGACAGTGGTGGTAAACAACATTGCAGTAGCTGAGCAGATTGGAGAGCTCTTCATACATTGTCGGCATGGCTGCCGTGCAGCAGGCACTGGGAAGCCCGGTGTCTTTGAGGTAGACCCAAGGGGCTGCCCCTTCACCATCAAGCTTAGTGCCCGGAAGGACCACGAGAGTAGTTGTGACTACAGGCCTGTGCGCTGCCCCAACAACCCCAGCTGCCCACCCCTTCTCAAGATGAACCTCGAGGCCCACCTGAAAGAATGCGAGCACATCAAGTGTCCCCACTCTAAGTGCACATTTATTGGGAATCAGGACACCTATGAGACGCACTTAGAAACATGTCGCTTTGAGGGCCTGAAGGAATTCCTGCAGCAGACCGATGACCGCTTCCACGAGATGCATGTGGCACTGGCCCAGAAGGACCAGGAGATTGCCTTTCTGCGTTCCATGCTGGGCAAACTCTCAGAGAAGATTGACCAGCTGGAGAAAAGCCTTGAGCTCAAGTTCGATGTCCTCGATGAGAACCAGAGCAAGCTCAGTGAGGACCTCATGGAATTCCGGAGGGATGCATCCATGTTGAATGATGAGCTGTCTCATATCAATGCACGCCTGAACATGGGTATCCTGGGATCCTATGATCCTCAGCAGATCTTCAAGTGCAAAGGGACCTTCGTGGGACACCAGGGCCCTGTCTGGTGTCTCTGTGTCTACTCCATGGGTGACCTGCTCTTCAGTGGCTCTTCTGACAAGACGATCAAGGTGTGGGACACGTGTACCACTTACAAGTGCCAAAAGACACTGGAAGGTCATGACGGTATTGTGCTGGCGCTCTGTATCCAGGGGTGCAAACTGTACAGTGGGTCTGCAGACTGCACCATCATTGTATGGGACATCCAGAACCTGCAGAAGGTGAACACCATCCGGGCCCATGACAACCCTGTGTGCACACTGGTGTCTTCCCATAACATGCTCTTCAGTGGCTCCCTTAAAGCCATCAAGGTCTGGGACATCGTGGGCACTGAGCTAAAGTTGAAGAAGGAACTCACAGGCCTCAACCACTGGGTGCGGGCCTTGGTGGCAGCACAGAGCTATCTGTACAGTGGCTCTTACCAGACAATCAAGATCTGGGACATTCGGACCCTTGACTGCATCCATGTCCTGCAGACATCTGGTGGCAGTGTGTATTCCATTGCTGTGACGAATCACCACATTGTCTGTGGCACCTATGAGAACCTCATTCATGTATGGGACATTGAATCCAAAGAGCAGGTGCGGACCCTAACGGGCCATGTGGGCACAGTATATGCCCTGGCAGTCATTTCAACACCAGACCAGACCAAAGTCTTCAGCGCATCCTATGACCGCTCCCTCAGGGTCTGGAGCATGGACAACATGATCTGCACACAGACGCTGCTGCGCCATCAGGGCAGTGTAACTGCACTGGCTGTCTCCCGGGGCCGGCTCTTCTCGGGGGCTGTGGATAGCACCGTGAAGGTTTGGACATGCTAACAGAATCCAGGCCAGGCTTGACTCCTTCTGGGTCTGTAAGTCAGGCTGGACCTCCATGATGGCCTTGGAATGTCCGCCTGTCCTGTGGAGACAGGTAGACAGGCTCAAACAGCTAGGCAGTGTCCTCTCTGCCTCTGCTCAGTGCGGGGTCTTTCATAAGGCCTCACTCTTACTTCTACCAGAGAAATGCCCAGGCCCTGCTCTGGGCGCCAGGTACGATGCTTGCCCGGCCCCACCATTCATATCACTCCATAGACttttgttttgagacagggtctcactatgtagctctggcttgcctggaactcactgtcaaccaggctggcctcaaactcacagatctgcctgcctccacctcccaagtgctgggagtaaaggcatgtgccaccgcccctggctGGACCCAGATGGACCATGGGTCCTTTTTACTCACCTTTTCTACTGGTTTTAGACTGTATATAGATTTTATTACTTCCCTGTTGAAATAAAAGCTGCACAGACTGTG