Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Lsm7
Plot displaying the genomic locations of a parental gene (in chr7) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated
Also known as -
Coordinate chr7:11724932-11732020
Strand +
Gene summary Predicted to contribute to RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of several cellular components, including Lsm1-7-Pat1 complex; spliceosomal complex; and spliceosomal snRNP complex. Orthologous to human LSM7 (LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Lsm7

Retroname Coord Strand Genomic Region ENSG
Lsm7P1 chr18:62279048-62279255 - Intergenic
N/A UCSC
Lsm7P2 chr19:49803774-49804230 + Intragenic
N/A UCSC

Expression

Transcript Sequences

>NM_001108732.1
CCTGCGCAGAACGACGCGCGGCGACAAGATGGCGGACAAAGAGAAAAAGAAGAAAGAAAGCATCTTGGACCTGTCCAAGTATATTGATAAGACCATTCGAGTCAAGTTCCAGGGTGGCCGGGAAGCCAGCGGCATCCTGAAAGGGTTTGACCCACTGCTCAACCTGGTGCTGGATGGGACCATTGAATACATGCGAGACCCCGATGACCAGTACAAGCTGACAGAGGACACTCGGCAGCTGGGGCTCGTAGTGTGCCGTGGCACCTCGGTGGTGCTCATCTGCCCGCAGGATGGCATGGAGGCCATCCCTAACCCCTTTGTGCAGCAGCAGGACACTTAGCAGCAGTGGAGGGTGGCCCAGCCCCAGGGGCCTTCCTTCTATGGGGTGAACttctgtttgatgtcttggtctttttttcttgttttgttttgttttgttttttAATAAAATTGCCCATGTGAGCATCCCTGTCCCTCCCCCACTCCTT
>XM_008765118.2
CCCCCCGCGTTAGGAAGGGGTGGGGCGGCGCCTGCGCAGAACGACGCGCGGCGACAAGATGGCGCAGGACAAAGAGAAAAAGAAGAAAGAAAGCATCTTGGACCTGTCCAAGTATATTGATAAGACCATTCGAGTCAAGTTCCAGGGTGGCCGGGAAGCCAGCGGCATCCTGAAAGGGTTTGACCCACTGCTCAACCTGGTGCTGGATGGGACCATTGAATACATGCGAGACCCCGATGACCAGTACAAGCTGACAGAGGACACTCGGCAGCTGGGGCTCGTAGTGTGCCGTGGCACCTCGGTGGTGCTCATCTGCCCGCAGGATGGCATGGAGGCCATCCCTAACCCCTTTGTGCAGCAGCAGGACACTTAGCAGCAGTGGAGGGTGGCCCAGCCCCAGGGGCCTTCCTTCTATGGGGTGAACttctgtttgatgtcttggtctttttttcttgttttgttttgttttgttttttAATAAAATTGCCCATGTGAGCATCCCTGTCCCTCCCCCA