Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Pym1
Plot displaying the genomic locations of a parental gene (in chr7) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name PYM homolog 1, exon junction complex associated factor
Also known as RGD1306096|Wibg
Coordinate chr7:3172798-3193994
Strand +
Gene summary Predicted to enable RNA binding activity and ribosome binding activity. Predicted to be involved in exon-exon junction complex disassembly; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; and positive regulation of translation. Predicted to be located in cell junction; cytosol; and nuclear lumen. Predicted to be part of exon-exon junction complex. Predicted to be active in cytoplasm. Orthologous to human PYM1 (PYM homolog 1, exon junction complex associated factor). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Pym1

Retroname Coord Strand Genomic Region ENSG
Pym1P1 chr1:81641269-81642332 - Intergenic
N/A UCSC
Pym1P2 chr1:83001330-83002393 - Intergenic
N/A UCSC
Pym1P4 chr5:33655248-33656327 + Intragenic
N/A UCSC
Pym1P3 chr4:166601907-166602060 + Intergenic
N/A UCSC
Pym1P5 chr6:30770727-30771214 - Intergenic
N/A UCSC
Pym1P6 chr7:139497-140250 + Intergenic
N/A UCSC
Pym1P7 chr7:1731794-1732253 - Intragenic
N/A UCSC
Pym1P8 chr7:2300422-2301451 + Intragenic
N/A UCSC
Pym1P9 chr9:105983035-105984063 - Intergenic
N/A UCSC
Pym1P10 chr9:12126198-12126651 - Intergenic
N/A UCSC
Pym1P11 chr9:8707830-8708682 + Intragenic
N/A UCSC
Pym1P12 chr11:39246015-39246941 - Intergenic
N/A UCSC
Pym1P13 chr16:123657-124618 + Intergenic
N/A UCSC

Expression

Transcript Sequences

>NM_001108986.1
CACTACTGAGCAGCAGGCCAAGAAGTTACCTCGCCGCTGAATCCCCAGGGCTGCTCGCCAACTCAGTCATGAAAACCTCCAGCACCCCTGAGGCCACGGGCACAGGCAAGTACATTGCCTCAACACAGAGACCCGACGGGACATGGCGCAAGCAACGGAGGGTCAAAGAAGGATACGTGCCCCAAGAGGAGGTCCCAGTCTATGAAAACAAGTATGTGAAGTTTTTCAAGAGTAAACCGGAACTTCCCCCAGGGCTGAGCCCTGAGGCCACCACACAGGTCACACCATCCAGACCTGACAGTGGTGAAGCAGGCCTCTCCAAGACAGCCAAACGCAACCTGAAGCGGAAGGAGAAGAGGAGGCAGCAGCAGGAGAAAGACGCGGAGGCCTTGAGCAGGACTCTTGATAAGGTGTCTCTGGGAGACTCAGCCCAGATGCCCAGTGCTCACCATGGCCCCCAAGCCACCCCTCCAGCTGCCTCCGATGCACCTGACTCTGCTGCCACCACAGAGAAAGCCAAGAAGATCAAGAACCTGAGGAAGAAGCTGCGACAGGTGGAGGAGCTGCAGCAGCGCATCCAGGCCGGGGAGATCAGCCAGCCTAGCAGAGAGCAGCTGGAGAAGCTGGCACGGCGGAGGGTGCTGGAGGAGGAGCTGGAGGACTTGGAGTTGGGCCTGTGAGGCTTCAGGAGTAGGGGAGTGGACTGCAGAACAAACCATGGGGTGCTCTGGGGTCCAGGGAGCGTGGGCCGCAGCAGTCAGGAGGGGCACCCCCATACTGGCTCACTTCCACCTCCTCTGGCCCGACTCCGTCCTCCAGAGCCGAGGCTCTCTCTCCTTCATCCCTTTCCCTTCTCAGCTCCCATTTTTGAACTTTTCCCTTCCATCCATTGTTCACAGTCTGAGTGCTGACCCCAGGTACCTCTGCTGCTGATCTGGGTGTCTTGTTGAAAAGGAACCCCAGGAGGGTGGGAGTCTGTCGGAGATCTGAGGCTGAGGGTACAAGGAGTACCCACGTTTTAGAGTCTTGGTTCCTGTTCAGTGTTTATGAGTTACTTCCCTGCCATCCCGAACCTCTtcttcctcttcctcttcctcctcctcctcctctttttttttttttttttttttttAAAGGCAGTAAGAATAAATTCAACTAGACGGC
>XM_008765032.2
GACCCGCAGTGCGCCGATCTTTGCGCGCTCTTTTCCTAGGTCTCTGTTCAGTTAAGCTGGGCGGCAGAGAGTGATCGACAGGCGAAGTAGACCTGCCCACCTTAAGTGTTAGTCGGGGTTTTCGTGCATCCCCTGCACTCCTGAGACTCTTCTGCTCGTGCCAATGAGCGCCCTGGAATTTGGTGCAGGCTACGGGCCTTGCATCTTCCTTTCCTCTTTTACCAGCTTTTCTACTGGGCCTTGAGCCTGAGAGGACTGTCTGGAGTAAGGCTTATGTAGGAACTTCTCTTCGAATCCAGAGGATTGTTTTATATACATCAGGAGGTCAACAGTGGTATCGGTGGTAGTAAAAGAGCTCACGACTATGAGCGTCTACACTCCCCTTTCCGCCTCCCGAGTCAAAGAAATGGGGCAGTCTCTCTTTAAGATTAAAATGGTGGCTTGCTATGAGGAGAACTCCACTTCCGGCGGGGAGGGGGCGGGACCCCAGCCCGCTCACGCCGGAAGTGGTTAGGGTTCTCAAGATGGCGACTCCCTATGTAACTGACGAGACCGGCGGCAAGTACATTGCCTCAACACAGAGACCCGACGGGACATGGCGCAAGCAACGGAGGGTCAAAGAAGGATACGTGCCCCAAGAGGAGGTCCCAGTCTATGAAAACAAGTATGTGAAGTTTTTCAAGAGTAAACCGGAACTTCCCCCAGGGCTGAGCCCTGAGGCCACCACACAGGTCACACCATCCAGACCTGACAGTGGTGAAGCAGGCCTCTCCAAGACAGCCAAACGCAACCTGAAGCGGAAGGAGAAGAGGAGGCAGCAGCAGGAGAAAGACGCGGAGGCCTTGAGCAGGACTCTTGATAAGGTGTCTCTGGGAGACTCAGCCCAGATGCCCAGTGCTCACCATGGCCCCCAAGCCACCCCTCCAGCTGCCTCCGATGCACCTGACTCTGCTGCCACCACAGAGAAAGCCAAGAAGATCAAGAACCTGAGGAAGAAGCTGCGACAGGTGGAGGAGCTGCAGCAGCGCATCCAGGCCGGGGAGATCAGCCAGCCTAGCAGAGAGCAGCTGGAGAAGCTGGCACGGCGGAGGGTGCTGGAGGAGGAGCTGGAGGACTTGGAGTTGGGCCTGTGAGGCTTCAGGAGTAGGGGAGTGGACTGCAGAACAAACCATGGGGTGCTCTGGGGTCCAGGGAGCGTGGGCCGCAGCAGTCAGGAGGGGCACCCCCATACTGGCTCACTTCCACCTCCTCTGGCCCGACTCCGTCCTCCAGAGCCGAGGCTCTCTCTCCTTCATCCCTTTCCCTTCTCAGCTCCCATTTTTGAACTTTTCCCTTCCATCCATTGTTCACAGTCTGAGTGCTGACCCCAGGTACCTCTGCTGCTGATCTGGGTGTCTTGTTGAAAAGGAACCCCAGGAGGGTGGGAGTCTGTCGGAGATCTGAGGCTGAGGGTACAAGGAGTACCCACGTTTTAGAGTCTTGGTTCCTGTTCAGTGTTTATGAGTTACTTCCCTGCCATCCCGAACCTCTtcttcctcttcctcttcctcctcctcctcctctttttttttttttttttttttttAAAGGCAG