Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Ssbp1
Plot displaying the genomic locations of a parental gene (in chr6) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name single-stranded DNA binding protein 1
Also known as 2810480P10Rik|G630031O20Rik|MtSSB|mtDBP
Coordinate chr6:40448302-40458757
Strand +
Gene summary Predicted to enable chromatin binding activity; protein homodimerization activity; and single-stranded DNA binding activity. Acts upstream of or within mitochondrion morphogenesis. Located in mitochondrion. Is expressed in alimentary system; brain ventricular layer; and renal cortex. Human ortholog(s) of this gene implicated in optic atrophy. Orthologous to human SSBP1 (single stranded DNA binding protein 1). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Ssbp1

Retroname Coord Strand Genomic Region ENSG
Ssbp1P1 chr6:94326460-94327003 + Intergenic
 ENSMUSG00000107435 UCSC
Ssbp1P3 chr11:33122882-33123467 + Intergenic
 ENSMUSG00000099902 UCSC
Ssbp1P2 chr10:33339866-33340422 + Intragenic
 ENSMUSG00000111980 UCSC

Expression

Transcript Sequences

>NM_001286663.1
ggggagaaggctgGCACGAAGTTGTGTTTCCCGAGTGCACGGGCGCGTGCGGGGCTCGGGAGGAGTTGTGCGGCTCCTCGCTGGAGTCCGAGTGTCCCCCGCCGTTCCCTGTGCTGCTCGCGAGCGCCACTTTGGGGGAAGAGCAGCCTCTTGCCCCCGCGGCGAGGCTGGGGAGCCGGGCTTACTCAGCGCTAACGGGGACGAAGGCACTGATTTGCGTCCTTTCGGAGTAGCGTTTACTGTGCCCGCACTGTTTGTAGAGACAGTTTTAGGGGTCTAGAATAACAGaacaagttggaaaaaaaaatgtccgaGACAACTTCTATTGTAAAGAAATCTAGCAGACAATGGATTGCAAGTGAGAACAGGTTTTTCCCCTCTTTTCTGCTGGTTGAGACCCAGAACCACAGAGTTTCTTTTGTCTCGctcagtttttgttttcaaaaagaaaggaaCTCCCCACACGTGCAAAAAATGCGGTTGCAAATTGGGTGCACGAGAAGCTGGACGCGCTTAGGATTTAGGACTAGAGAGCATGTGTGTTCTTGATGGATACTGTAGTTTCTTGAtttatcatttttctcttttctttctttcctttaggaAAAGCCTAAAGATTAGGTTGTAAGAAAAACAGAAGCCATGTTTCGAAGACCTGTGTTACAGGTATTTCGTCAGTTTGTAAGACATGAGTCTGAAGTAGCCAGCAGTTTGGTTCTTGAACGATCTCTGAATCGTGTTCAGTTACTTGGACGAGTAGGTCAGGACCCTGTCATGAGACAGGTGGAAGGAAAAAACCCAGTCACAATATTTTCTCTAGCAACAAATGAGATGTGGCGATCAGGGGATAGTGAAGTATACCAAATGGGTGACGTTAGTCAGAAGACGACGTGGCACAGAATATCAGTGTTTCGACCAGGCCTCAGAGATGTGGCATATCAGTATGTGAAAAAGGGGGCTCGTATATTTGTGGAAGGGAAAGTGGACTATGGCGAGTACATGGATAAAAACAATGTGAGGCGGCAAGCAACAACAATCATAGCTGataacattatatttctgAGTGACCAGACAAAAGAAAAGGCATAGAACGGATGATTCGTCTTTGATCATTGTTTGGTACAGTCTCCTTTGCAAATCATGTATAGTCTATagtttaaagataaaaattaaattttttatatgaaaTGAGTGGTTATATTTTTCTTGATTGACAtatcttaagtgtgtgtgtgtgtgtgtgtgtattaagccTGTCATTTTGGCACTTATcaattgcttgcttttttttaggAGTGGTTTCTCTGTAGAAAGGTACAAAGTAATACATTCTCAGGCTCCCTATGTGTGCCAGGGCCAAGGCATACATCTGGAAAGCCCTTTCTGCTTCACACTTGCCCTGTGGTGTTTCACCACTGGTTACCTTAGAGCCTTATGTCAAGAGTCTGTCTGTCATCGTTGTAAACACTGATGTTTTTGCATATCTCTGTACACCTGTAGGTAAGTAGTGACTCTGTTTGGTGTTCCTGTATGTACCTTTAGTTGTGTTGGCATGGAAGAGCCACCAGTAAGTGCTGACAGGGAAATGATCCTGAATTGAAGGAGACTGCTGAACACTGGTTAGCATTCTAAACTGTTGTAGAATTAACCCACCTTCATATCTTGTTTCTTGttagttttcctgtaatttttatgAGATTTTATCAGCACTAAGGACCTGAATGAAGTATAACTACAGATGACATAGTTCTTGTCCTGGTGTCAAGGCCTTCTTTCCACACCACTCTGTGTTATTTTTTTCAGAGTTTATTCTATATGCTTAAGGGTGGAAATGAAGATCTTTCTCTGGTGCTCGGGATTAAACCTATGGTCATGTTAGGCAGGCCGTCTCCCGTTGAGCTGTACCTACTTCAAAGATCTTTTACCTTCGACTTTGCCTCCCTAGAGAGTCTGGATATATTTAGTTAATTTTGTTGTAAATTTACTAGTAATTTACCAATAAAGAGTATATAAACT
>NM_001364578.1
ggggagaaggctgGCACGAAGTTGTGTTTCCCGAGTGCACGGGCGCGTGCGGGGCTCGGGAGGAGTTGTGCGGCTCCTCGCTGGAGTCCGAGTGTCCCCCGCCGTTCCCTGTGCTGCTCGCGAGCGCCACTTTGGGGGAAGAGCAGCCTCTTGCCCCCGCGGCGAGGCTGGGGAGCCGGGCTTACTCAGCGCTAACGGGGACGAAGGCACTGATTTGCGTCCTTTCGGAGTAGCGTTTACTGTGCCCGCACTGTTTGTAGAGACAGTTTTAGGGGTCTAGAATAACAGaacaagttggaaaaaaaaatgtccgaGACAACTTCTATTGTAAAGAAATCTAGCAGACAATGGATTGCAAgaAAAGCCTAAAGATTAGGTTGTAAGAAAAACAGAAGCCATGTTTCGAAGACCTGTGTTACAGGTATTTCGTCAGTTTGTAAGACATGAGTCTGAAGTAGCCAGCAGTTTGGTTCTTGAACGATCTCTGAATCGTGTTCAGTTACTTGGACGAGTAGGTCAGGACCCTGTCATGAGACAGGTGGAAGGAAAAAACCCAGTCACAATATTTTCTCTAGCAACAAATGAGATGTGGCGATCAGGGGATAGTGAAGTATACCAAATGGGTGACGTTAGTCAGAAGACGACGTGGCACAGAATATCAGTGTTTCGACCAGGCCTCAGAGATGTGGCATATCAGTATGTGAAAAAGGGGGCTCGTATATTTGTGGAAGGGAAAGTGGACTATGGCGAGTACATGGATAAAAACAATGTGAGGCGGCAAGCAACAACAATCATAGCTGataacattatatttctgAGTGACCAGACAAAAGAAAAGGCATAGAACGGATGATTCGTCTTTGATCATTGTTTGGTACAGTCTCCTTTGCAAATCATGTATAGTCTATagtttaaagataaaaattaaattttttatatgaaaTGAGTGGTTATATTTTTCTTGATTGACAtatcttaagtgtgtgtgtgtgtgtgtgtgtattaagccTGTCATTTTGGCACTTATcaattgcttgcttttttttaggAGTGGTTTCTCTGTAGAAAGGTACAAAGTAATACATTCTCAGGCTCCCTATGTGTGCCAGGGCCAAGGCATACATCTGGAAAGCCCTTTCTGCTTCACACTTGCCCTGTGGTGTTTCACCACTGGTTACCTTAGAGCCTTATGTCAAGAGTCTGTCTGTCATCGTTGTAAACACTGATGTTTTTGCATATCTCTGTACACCTGTAGGTAAGTAGTGACTCTGTTTGGTGTTCCTGTATGTACCTTTAGTTGTGTTGGCATGGAAGAGCCACCAGTAAGTGCTGACAGGGAAATGATCCTGAATTGAAGGAGACTGCTGAACACTGGTTAGCATTCTAAACTGTTGTAGAATTAACCCACCTTCATATCTTGTTTCTTGttagttttcctgtaatttttatgAGATTTTATCAGCACTAAGGACCTGAATGAAGTATAACTACAGATGACATAGTTCTTGTCCTGGTGTCAAGGCCTTCTTTCCACACCACTCTGTGTTATTTTTTTCAGAGTTTATTCTATATGCTTAAGGGTGGAAATGAAGATCTTTCTCTGGTGCTCGGGATTAAACCTATGGTCATGTTAGGCAGGCCGTCTCCCGTTGAGCTGTACCTACTTCAAAGATCTTTTACCTTCGACTTTGCCTCCCTAGAGAGTCTGGATATATTTAGTTAATTTTGTTGTAAATTTACTAGTAATTTACCAATAAAGAGTATATAAACT
>NM_212468.3
CGTGCGCCGGAAGCGAGCCGCTGGCGGTCGGGCTCTGCGTGTCCggaAAAGCCTAAAGATTAGGTTGTAAGAAAAACAGAAGCCATGTTTCGAAGACCTGTGTTACAGGTATTTCGTCAGTTTGTAAGACATGAGTCTGAAGTAGCCAGCAGTTTGGTTCTTGAACGATCTCTGAATCGTGTTCAGTTACTTGGACGAGTAGGTCAGGACCCTGTCATGAGACAGGTGGAAGGAAAAAACCCAGTCACAATATTTTCTCTAGCAACAAATGAGATGTGGCGATCAGGGGATAGTGAAGTATACCAAATGGGTGACGTTAGTCAGAAGACGACGTGGCACAGAATATCAGTGTTTCGACCAGGCCTCAGAGATGTGGCATATCAGTATGTGAAAAAGGGGGCTCGTATATTTGTGGAAGGGAAAGTGGACTATGGCGAGTACATGGATAAAAACAATGTGAGGCGGCAAGCAACAACAATCATAGCTGataacattatatttctgAGTGACCAGACAAAAGAAAAGGCATAGAACGGATGATTCGTCTTTGATCATTGTTTGGTACAGTCTCCTTTGCAAATCATGTATAGTCTATagtttaaagataaaaattaaattttttatatgaaaTGAGTGGTTATATTTTTCTTGATTGACAtatcttaagtgtgtgtgtgtgtgtgtgtgtattaagccTGTCATTTTGGCACTTATcaattgcttgcttttttttaggAGTGGTTTCTCTGTAGAAAGGTACAAAGTAATACATTCTCAGGCTCCCTATGTGTGCCAGGGCCAAGGCATACATCTGGAAAGCCCTTTCTGCTTCACACTTGCCCTGTGGTGTTTCACCACTGGTTACCTTAGAGCCTTATGTCAAGAGTCTGTCTGTCATCGTTGTAAACACTGATGTTTTTGCATATCTCTGTACACCTGTAGGTAAGTAGTGACTCTGTTTGGTGTTCCTGTATGTACCTTTAGTTGTGTTGGCATGGAAGAGCCACCAGTAAGTGCTGACAGGGAAATGATCCTGAATTGAAGGAGACTGCTGAACACTGGTTAGCATTCTAAACTGTTGTAGAATTAACCCACCTTCATATCTTGTTTCTTGttagttttcctgtaatttttatgAGATTTTATCAGCACTAAGGACCTGAATGAAGTATAACTACAGATGACATAGTTCTTGTCCTGGTGTCAAGGCCTTCTTTCCACACCACTCTGTGTTATTTTTTTCAGAGTTTATTCTATATGCTTAAGGGTGGAAATGAAGATCTTTCTCTGGTGCTCGGGATTAAACCTATGGTCATGTTAGGCAGGCCGTCTCCCGTTGAGCTGTACCTACTTCAAAGATCTTTTACCTTCGACTTTGCCTCCCTAGAGAGTCTGGATATATTTAGTTAATTTTGTTGTAAATTTACTAGTAATTTACCAATAAAGAGTATATAAACT