RCPedia: Genes

Summary

Gene Name	Vha16-1	Plot displaying the genomic locations of a parental gene (in chr2R) and its retrocopy(ies). Each line represents a retrocopy.
Specie	Drosophila melanogaster
Full Name	Vacuolar H[+] ATPase 16kD subunit 1
Also known as	ATP6V0C\|BcDNA:SD02875\|CG3161\|DmelCG3161\|DucC\|EP2372\|MRE15\|V-ATPase\|Vha1\|Vha16\|Vhac\|v-ATPase\|vha16\|vha16-1
Coordinate	chr2R:6625242-6633090
Strand	-
Gene summary	Predicted to enable proton transmembrane transporter activity. Predicted to contribute to proton-transporting ATPase activity, rotational mechanism. Involved in dsRNA transport and vacuolar acidification. Located in fusome. Part of plasma membrane proton-transporting V-type ATPase complex. Is expressed in several structures, including embryonic/larval midgut primordium; gut section; head; ovariole; and somatic muscle cell. Human ortholog(s) of this gene implicated in thyroid gland carcinoma. Orthologous to human ATP6V0C (ATPase H+ transporting V0 subunit c). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Vha16-1

Retroname	Coord	Strand	Genomic Region	ENSG
Vha16-1P1	chr3L:11473464-11473877	+	Intergenic	FBgn0028667	UCSC

Expression

Transcript Sequences

>NM_165475.3
GCCACTCGCAATTCGTTCGTCGTCGCAGCAGCATTGGTCGCAGAGCAGCGTAAAACCCCACGTATATAGCACATATATTGTACATATAATAAAAATACTTTGTTTCGACTTGAAGCAACGCATACATATAACGAGCGCGCATAACATTCAGATTCATCTGTGCAAAACGCCGAATAAAAACTATAGTGCAATCACCACAGCAGCAGCAAAACGAACTAAAATTTCGATTTCTCATCATTTGTAGCCTAAAAAACACACAACAAACAAAGCAAAATGTCTTCTGAAGTGAGCAGCGACAACCCCATCTATGGCCCCTTCTTCGGAGTTATGGGAGCCGCCTCCGCCATCATCTTCTCGGCCCTGGGCGCTGCTTATGGCACTGCTAAGTCTGGTACCGGTATTGCTGCCATGTCAGTGATGCGGCCTGAACTGATCATGAAATCCATCATTCCTGTGGTCATGGCGGGTATCATTGCCATTTACGGTCTGGTGGTGGCTGTGCTTATTGCCGGCGCGCTGGAAGAGCCATCAAAGTACTCACTATACAGGGGCTTCATTCACTTGGGAGCCGGTCTGGCGGTGGGCTTCTCTGGTCTGGCAGCTGGTTTTGCGATCGGCATCGTGGGAGACGCCGGTGTCCGTGGCACAGCACAGCAGCCTAGACTGTTCGTGGGCATGATCCTGATTCTCATCTTCGCCGAAGTGTTGGGTCTCTACGGCTTGATTGTGGCCATTTACCTGTACACGAAATAAATCAATCAATGCAAACACACAACAACAACAGATAGACAAACGGCGCCcagcggtcaacagcagccacatcaacatcagcagcagcttcaagaggagcagGTAAAATTGTGTCAAGCCAATGAGCAACGTGCAACATGCAACTTCCAACAAGCAAAAACCACAACAGTGCGTGTGCGGTGCAAGCCCGGCGTGGACCGTTTGTACATAGGGAGAACAACCAAAACCAGTCCTGCCGGACTGCAGGATCTCCGCCACGCACTGCCCATTGGTGGCCGCCGATTTGCACCTGTTGTTCAGTTTACCTCGATTCGCTGGCGCGTGGTTTAGCTTAGTTATTTTCCGTTCAAAATCAGTCTTAAACACGAGGAAAACAATTTGCAATTAAGTTCATAAAGATGTAATAATTATGATTTTTGCTATATCAAGAAATCCTGCTCTTTTACTTTTTATTTTGCGCTCCACAATTTTGTGTGCTCTTTGTTATTTGTTTTTTCCATTATTATTATTAAATAATGTTTAGTGTATATGTAAAGTTCGTTAAACAAAAAGAAAAAATTGTAAAGAAATCAACAACCAACAATTGTCAGAAGAAACTTTGTACATTTGCATTGAGCCTGACGCGGCTGCAACCAATTCAGATCAACAAATTTAGCGAAAGGGCcaaaacaacaaacaaacaagcagcaaccacaacatcaaTGCTACCGCCCGATGTCATCCGGTGCGGCAACGTACCGCTCTTGTCCGATTGCCGCTGTTTGGGCGCGCCCCGCCCCCTTCTTTGGTGGTGGGGGTGGAAGCCCAGTACAGTGGTGCCTCTGGATTTCGGACGGCAAGCGGACGCTTGGCAATACTTTATCGTCAACTGCGGAAACCAACTACATGCAATCATTcacacacacacacacaaaaccaacacacacacacacacatacaAAATGTAACTAAGTCCTACGTTTATTTTTAATTATTGTTCAATTCTAAGAATAATATATTAAAAATTAATAATAATAAATTATATATATAATTATGATTTTTTGTGATAAGAACAGATGGTAATGCAAACAATTACGGTATTGatatacataatatatacagaatatatatatatatataAACAAGAACAAGAAATCATAAACAATTATACATATTAACACGAGAAAGTTGTTATAAAACGTACGAAACAATACAAATCATGTGAATGAATGTAATGCGACAAACTAAAAAATACTGCAAATCAACAACCACAACACACACTTTTTCCGCTGTTATTGTATAGTAAAGAAAatattatatatataaatatatattatgtataaaatatTAACAAGAAATTGTAGTAGCAAAATTATAAACCAACAAACAAGAATACCCACAACAAAAGTCGTGCAAGCAGAACCCAAAAACCGTAGACGAATGTTGCAAATGAAACTCATACCAACAACAACCACATTAGCAACACGAAATCTACCAGAAAAATCCAACAAAAAAAATTGTAAAATCCCAACAAATTAGAAGTTATAAGAAGCTACTTCGGAACCGAACCCAACAACACCCGATCAACATGTATAGTAGTGGCATTAGGCAAATAACAATTAATTTGTAGGAGAGCCACGCAAGCCGAACGACCCGGTCCCGAGAAGGATGCACATTCCACCGCCCGTTGGACGCCGATGCATTCGTGATGCTGAGAATGCGGAGGAGCTCAACCTGTGCGGAGGCGCTGAATTCCCGGGACCCGAATCGCTCTGCTTGCGCACACCTCCCGATCCCCACAAGAAAGCGACCACAACAGAAATGCACAAAACACACCTGCAATAAACCACTTGTGCTCACAATCAATCAGCAATTGTATATAAGCATGTGACGTTGCCTGTCAATCACAGATTCCCCCATCCGACACCGAATCATGATGCAGCGTCAGTGTTACGTTCCCATCGGAAAACGGTGGGGGAAACTAATTAACTCGATTGCTAGCTTAAGGAACTCACGAAGCAAGTGTTGAATAGTCCGTTTATTATTGTTACGCGTACCCCCAACAATTGTGTCACGAATTCATATTGTTATTTGTTTAAGTTGCATGCACCCCACAACATAGACCTACCTATACATGTATCCAATGGTGCGGTTTTAGAAACTGTAACTGTGTATTCGAAACAACTTATAAAGCAAGTAAACAACCATCAACAACAGACATTGTATGAAATAAATTGTAATTTCTAATTTCC