RCPedia: Genes

Summary

Gene Name	Znhit3	Plot displaying the genomic locations of a parental gene (in chr10) and its retrocopy(ies). Each line represents a retrocopy.
Specie	Rattus norvegicus
Full Name	zinc finger, HIT-type containing 3
Also known as	Trip3
Coordinate	chr10:72227710-72235932
Strand	-
Gene summary	Predicted to enable metal ion binding activity. Predicted to be involved in box C/D snoRNP assembly; maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); and snoRNA localization. Predicted to be located in cytoplasm. Predicted to be part of pre-snoRNP complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in PEHO syndrome. Orthologous to human ZNHIT3 (zinc finger HIT-type containing 3). [provided by Alliance of Genome Resources, Apr 2022]

Retroname	Coord	Strand	Genomic Region	ENSG
Znhit3P1	chr4:167536665-167537109	+	Intergenic	N/A	UCSC

>XM_573169.7
CTCGTTTTTGGTAAAAGGGTGAGCGCAGAGTCGTCTGGGAAGTCATGGCGTCGCTAAATAGTAAGACTGCGATCTGTGTGATCTGCTCGGAGAAGCCGAAATACCGCTGCCCAGCTTGCCGCGTGCCCTACTGCTCGGTCGCCTGTTTCCAGAAGCACAAAGAGCAGTGCAACTCTGAAGCACGTCCTGTTGAGAAAAGCCCAACAGTGGTTCCCGTAAGGACTGAGGAAAACAAAGGTGACGACTCCTCTATAGCTGATTTCCTCAACAGTGATGAGGAAGACGATAGAGTGTCTGTGCAGAGTTTAAAGAATCTAGGTAAATCAGAAACTTTAAGAAGCTTACTGCTCAACCCGCACCTGAGGCAGCTGATGATTAGCCTTGATCAGGGCGACAACAAGGCGAAGCTGATGAAAGCCTGCATGCAGGAGCCCCTGTTCGTGGAGTTTGCAGACTGCTGTTTAAGAATTGTGGAACCATCCCAGAACAAAGATTCTTAAAACTGGATATGCTGTCTGCTCAAGCCGCCCGCCCACTGCTCCGAGGAGGAGGTTTTCAGGCTGTGGTAGCACGTGTGGGTCTTTTCTATCACAGCGCTCGCTGCAGAGCCTTTGTGAAGAGGAAACTTGCAGCccggagagatggctcagcagctaaagagcgctgatgcttttccagaggaccccagcacccacttgactacttaacaactgtaattagctccagaggattggacaccctcttctgacctctgcaggtactgtatgcatgtggtacacatcatatatacagggaaactacatacataaagtaCTTAGAGAGTTGGCTATTTATATTTAGATGGTGGGTCTAAATTTTATTTCTTGTACAGTTCAGAGTTACATCATAAATACCAAGTGTATCCATTTGAATCGAAAACTGATAGTGTTAAGAAATTTAAGGTGTGGTTCTCTTGACCCTGTATTGTTCATTGTCCTTGGTAACATTAAATAAATCAGTTTATTAAATATTA