Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Lsm6
Plot displaying the genomic locations of a parental gene (in chr19) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated
Also known as RGD1561937
Coordinate chr19:32770640-32785215
Strand +
Gene summary Predicted to enable RNA binding activity and protein heterodimerization activity. Predicted to be involved in mRNA splicing, via spliceosome and maturation of SSU-rRNA. Predicted to act upstream of or within mRNA catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of several cellular components, including Lsm2-8 complex; U2-type precatalytic spliceosome; and spliceosomal snRNP complex. Predicted to be active in P-body and nucleolus. Orthologous to human LSM6 (LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Lsm6

Retroname Coord Strand Genomic Region ENSG
Lsm6P1 chr5:79562885-79563174 - Intragenic
 N/A UCSC
Lsm6P2 chr7:101087590-101088160 - Intergenic
 N/A UCSC

Expression

Transcript Sequences

>NM_001126085.1
GCGGGAAAATGCGCTGCCGGGGGCGGTTTCGGTTTTCGGCGCGCGCGTCCGCGGAGGCCCGGCCTGTGAGGGCTCCGGATCCCGCTGTAAGatgagcctggggccatgacaagtgaaatgGTGATGAGTTACCTGAGATGCTAAttaagtaacagaggagattagaactcaggtttcctgcctcccaaGATTGTTAAAAATGAGTCTGCGGAAGCAAACCCCTAGTGACTTCTTAAAGCAGATCATCGGGCGCCCAGTTGTGGTGAAATTAAACTCTGGCGTGGATTACCGAGGGGTCCTGGCCTGCCTGGATGGCTACATGAATATAGCATTGGAACAGACAGAGGAGTATGTAAACGGACAGCTGAAGAATAAGTATGGAGACGCATTCATCCGCGGAAACAATGTGCTGTACATAAGTACACAGAAGAGGCGGATGTGAAGACGCCAGGAGAGAGGCACTGCTCTTCAGCGATGGATATATGATCACTCTTATGATCTTGGTGGCCTGTTTTTGTGGTGGCTGGTGGGGGTTTTGTTTTCTTTTGTTTTTTTAATTGACATCAGAATAAGATAGAGGTATTACATTACAGATTGAATCTTAAGCTTTTCACATTTGTTTCATTGCTTATTATTTCTGCCTGTACAGATGCTAAAATTAAAACAGTTTGTTTCTCAAGGATTGTTTTACCTCAGGTTGCAAGCAGTGTCATTTGTTGGTTGAGTACGCATCCAACTGACTAAGCGGTACATTCCGTGATCAAGCCGTCTGGAGGCTTCCCTTGTCTCTTTCCCTGCTCACTCGCCATCCATAACATTTAAAGCAGGTAGATGAAAACCTTCTAGGAAGTCGTGTGGTTTCAGCCTTGTGCTATAGAGAGACAAGAGGTCAGAAGTTGAGCTGTTGGTTTAGTCGCTGGTGCTGGTATCCCCACAAGGAGTGCAGCTCTGTAGACCCTGTGGGCTTGTACAGGTTGGCCACAGCAGGTGAGAAGGTTGTTTGGAATCCTCAAGCCGTCCTGCCGATCCTCCTGTGCAGTTCAACTCTTTATGTTAACTTGCTCCCTGACAAGAGTGTTGGCAGCAATGGTAGGTTACTCCAATCGAGGGGAGCTCAGCTGTCCCTCCGTCACTCTGGCCGTGCTTGAGGTGGTATAAGCGCAGAGTCCCCGACCTCGGTTTCCAGGTGCTGAGCTGCTTTCTGTTTTAGCAGGTGGTCCTGGAGAGTGGTATTCCGGAACAGGGTCGCTTGGCACAGGCAGAGCCTCCAGGTCATGTGACTCCTGCTAAGTGCGTTGTGCTGTCTGTAGAGATTGTGTTTGGGTGCTTCAGTTGCATGGACACTGGGGCTTTTCTTATCCCTCCTTCAATCTAAACAGAATCCCTGGCTCAGGAGGTGGGACAGTTTTGGAACAATTGCCTGGCTgagggaagtaagagagatgggaagctagggagggagggagggCATACTTTCTGGAGAGGTGCATATATGCCATTTGTCTCGTTTAACTAGTAATCAGAAACAGTTAATAACTCAGGAAAGACAAAAAATGTTTTGTAAGGTTTGATGGTGTGCACACTGAAAATAAAACACTTTATCCTAAGCTTCAGTAATTCATCACTTCCTGACAGGGGCTTGAAAAGGGACCAGTGTGTAAGTACAAATCACCAATTTGCTCTTTTATAAATGGCTTCTTTAAAGGAGAAAATGGATGTCTCTCAGAGTGGAGCACACATGTTCTCATTTGTTTTTAGAGTGTGTGAGGCTGCCAGGTTACTGTGTCCCTTCATTCACTCACTCAGCCGCCCCTGAAAGCAGTTGTAGCATCCCCCACCAGTCTGTAGCATCCCGTCTTCGCTCATTTCTTCCCTGACCTCTCCTCCAGCATGTGGGCCTTTATTTCCCTCTTGCCATTTCTGGCTTAATAGCTCGACTGCAGAATGTTGTTTTCATCCATAGAACCGCTTTTAATCAAGACCGACTTTGGGAACTGCTACCGTTTTTATGGTAATAAAGAACCATATGCATCTGGACCAGCACATGTTGTCCCCTGTGCATACCTTCTTGTGATAGAATTCTGAAACAAATTGTAAATGCTAAAATTACTTTTCCTTA