Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Cactin
Plot displaying the genomic locations of a parental gene (in chr7) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name cactin, spliceosome C complex subunit
Also known as RGD1563634
Coordinate chr7:11258526-11266509
Strand -
Gene summary Predicted to be involved in several processes, including cellular response to cytokine stimulus; negative regulation of cytokine production; and negative regulation of signal transduction. Predicted to be located in cytosol and nuclear speck. Predicted to be part of catalytic step 2 spliceosome. Predicted to be active in cytoplasm. Orthologous to human CACTIN (cactin, spliceosome C complex subunit). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Cactin

Retroname Coord Strand Genomic Region ENSG
CactinP1 chr4:105218251-105220013 + Intergenic
 N/A UCSC
CactinP2 chr10:93400672-93402661 - Intergenic
 N/A UCSC
CactinP3 chr12:52248986-52249164 + Intergenic
 N/A UCSC
CactinP4 chrX:90823727-90824751 + Intergenic
 N/A UCSC

Expression

Transcript Sequences

>NM_001081447.1
CGCGCATGCGCGGCGCGGGCCGCCAAATGGGTTCGCACTCTCGCTCGCGCTCACGATCTGCGGGTCgtaggagtcggaagcagcggagtaggagtagaagCTGCAGCAggagccggagccgaagccggagccggagccggagccggagccATGGGGGGAGCGGCCGAAGGCGACGGGAACATGAGCGGCGGCGCGAACGCAAACGGCGCAGTCGAGGGCGCAGGTCAGATTCGGAAGGAAACCGTGTGCAGAAGTCTAGGAGGCGAAGCCGGAGCCTTCGGCCACCCCGATGGCACTCACAGGACCGGTCCTCACACTCTGACTCGGGTGAGGAGCAAGCACAGGGCTCCCGAGCCCGGAAGGGTCACAGGCATTCGTGGTCCCCAGGGTCATCAGCATCTAGCTCTGACTCCCCAAGACGCTCCCGGAGTCCTGGAGTAGCTGCCCTGGCCGCGAGTCAGCAGCAGAGCCTTCAGGAACGGCTGCGGCTTCGTGAGGAGCGAAAGCAGCAAGAAGAGCTGCTCAAGGCCTTCGAGACACCCGAGGAGAAGCGTGCCCGGCGACTGGCCAAGAAAGAAGCTAAGGAGCGCAAGAAGCGTGAGAAGATGGGCTGGGGTGAGGAGTACATGGGCTACACCAACACCGACAACCCCTTTGGAGACAACAACCTGCTGGGCACTTTTATCTGGAACAAAGCCTTGGAGAAAAAAGGCATCGGTCACCTGGAGGAAAAGGAGCTGAAGGAACGTAACAAGAGGATCCAGGAGGAGAACCGGCTAGAGCTGCAAAAGGTAAAACAGCTGCGgctggagcgggaacgggagaaggccatgcgggagcaggaactggaACTGTTGCAACGGGAGAAGGAGGCAGAGCACTTTAAGACCTGGGAGGAGCAGGAGGACAGCTTCCACTTGCGGCAGGCCAAGCTTCGTTCCAAGATCCGAATCCGAGACGGGCGGGCCAAGCCCATTGACTTGCTGGCCAAGTACATCAGTGCAGAGGACGATGACCTGGCAGTGGAGATGCATGAACCTTACACCTTCCTCAACGGCCTCACGGTGGCAGACATGGAGGACCTGCTAGAGGACATCCAGGTGTACATGGAGCTGGAGCAGGGCAAGAACGTGGACTTCTGGCGAGACATGACAACCATCACAGAGGATGAGATTGCCAAGCTCCGCAAGCTGGAGGCCTCGGGCAAGGGCCCAGGTGAGCGCCGTGAGGGGGTCAACGCCTCGGTCAGCTCTGACGTGCAGTCCGTCTTCAAGGGAAAGACGTACAACCAGCTGCAGGTCATCTTCCAGGGCATCGAAGGCAAGATCCGTGCCGGCGGCCCCAACCTCGACATGGGCTACTGGGAGAGCCTGCTGCAGCAGTTGCGCGCGCACATGGCCAGGGCCAGGCTCCGTGAGCGCCACCAAGATGTCCTTAGACAGAAGCTGTTCAAACTGAAGCAGGAGCAGGGTGTGGAGAGTGAGCCGCTGTTTCCCATCCTCAAGTCAGAGCCCACAGCCACTCACAGCCCTGAACCTGAGGAACGGCCTCCCAGCCCTGGGACTTCAGTGGACCCCGTGGAACCCGAGGAGACCACAGCAGCAggcgaggcagagggagaggcagatggcgaggcagTGCTGATGGAGGAGGACCTGATCCAGCAGAGCCTGGCAGACTATGACGCTGGCCGCTACAGCCCACGACTGCTCACCGCGCACGAGTTGCCTTTGGACGCGCATGTGCTGGAGCCGCATGAGGACCTGCAGCGCCTGCAGCTGTCTCGCCAGCAGCTTCAGGCTACAGGTGACGCGAGCGAGAGTGCTGAGGACATCTTCTTCCGGCGTGCGAGGGAGGGCATGGGGCAGGATGAGGCACAGTTCAGCGTGGAGATGCCACTGGGTGGCCGCGCCTACCTGTGGGCCGACAAGTATCGGCCGCGGAAGCCGCGATTCTTTAACCGTGTGCACACAGGCTTTGAATGGAACAAATATAACCAGACACATTATGACTTTGACAACCCTCCACCCAAGATCGTGCAGGGCTACAAATTTAACATCTTCTACCCGGACCTCATCCGCAAACGTGCCACACCAGAGTACTTCCTGGAGGCCTGCGCTGACAACCGGGACTTTGCCATCCTGCGTTTCCACGCAGGCCCGCCCTACGAGGACATCGCCTTCAAGATCGTCAGTCGAGAATGGGAGTACTCGCACCGCCATGGCTTCCGCTGCCAGTTTGCCAATGGAATCTTCCAGCTCTGGTTCCACTTCAAGCGCTACCGCTACCGCCGGTGACGCCTGTGGGCAGGCTGCCCGCCCCTGCCATGCTGGCCCCTGGACAGCTCCTGGATGGGAAGGTTGAGAGGACCAGGAGGTCTTCTTCAGAAGCCTTGGGGATCCGTGGACCACCTCTGGGCTTCAGTCACCAGCACTGTGCTGGCCGCAGCCCCTCTGGCAGGTCCCTTCCTGTCTTGAAAGGATTTTAGAAAGACTGCTTGAGGTGGCAGAAACCCTTTGTTCCTGTTCCCGTGGACTTATTCAACCGCGGAGCCCTACATGGTTTTGATACGTTTAATAGAAAGCTTATTCTAAA