Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name SS18L2
Plot displaying the genomic locations of a parental gene (in chr3) and its retrocopy(ies). Each line represents a retrocopy.
Specie Homo sapiens
Full Name SS18 like 2
Also known as KIAA-iso
Coordinate chr3:42581840-42596934
Strand +
Gene summary Synovial sarcomas occur most frequently in the extremities around large joints. More than 90% of cases have a recurrent and specific chromosomal translocation, t(X;18)(p11.2;q11.2), in which the 5-prime end of the SS18 gene (MIM 600192) is fused in-frame to the 3-prime end of the SSX1 (MIM 312820), SSX2 (MIM 300192), or SSX4 (MIM 300326) gene. The SS18L2 gene is homologous to SS18.[supplied by OMIM, Jul 2002]

Retrocopy(s) from SS18L2

Retroname Coord Strand Genomic Region ENSG
SS18L2P1 chr10:34875208-34876225 + Intergenic
 ENSG00000232525 UCSC
SS18L2P2 chr18:51420652-51421234 - Intergenic
 ENSG00000266201 UCSC

Expression

Transcript Sequences

>NM_001370300.1
GAGTTGCTTGGCGGTCGTGGTTCCGGAGGTTCCTCGGGATGTCGGTGGCCTTCGTACCGGACTGGCTGAGGGGCAAGGCGGAAGTCAATCAAGAGACTATCCAGCGGCTCCTTGAGGAGAATGACCAGCTGATCCGCTGTATTGTGGAGTATCAGAACAAGGGCCGCGGGAACGAGTGCGTGCAGTACCAGCATGTGTTACATAGAAATCTCATTTATTTGGCTACCATTGCAGATGCCAGTCCAACCAGCACTTCAAAAGCAATGGAATAATCTTTCAAAAGCAATAGAATAATCTTCCATTTGGCTGTCGTGAGGAGTAATTGAATGTAATCCATCTCTTACAAAATGGAGACAGGGTCTTTACCAACTCAACTGGTTAAAACATGAATGAAACCTCTGTGGCTCTTTCGAAACGTGAAAATGTGAAGAAAGCTACTAACTTAGCTGTATTCTCATGTAAATATTTTTTAAATAATTAAGCAAATCCCTCAATAAGTTGAGCCCAGGTGTCCTCTTTCCTGAACTTGGAGCATGTTTGGATAACAAAGACATCACTGGGATGTTCAAGTCTACTTTTTAGTTTCAACCTGAAGAGGAAACTCAGTAGGTGTTGGGCAGGAATTGGTGAGATTCCTGACTTGATACCTTGCTAAATGGACATGTAACTGTGTGCTCCTTCCTATCAGTTTGTAAATGTGGTCCCCCTGACTGCTGTTTTCAGATTGCTTTGAAATAAAGCTTATTTTTCTATAAAATACTGATGTGGAGGTATAGAAGTTTTCATGTAATAAGTATTCCATTTGGTTTTCAAGAATAACTGTGAGGACTTAACCAtaaagtatataaaaacaatactattatcattgccaacaaaatgaatagtgatttctaattattatctaatatcatctgataatagatgatgtttaattttcttcagttatcagatagtctttttgttgatttgtctgaaccagaatccaaataagattcacatgttgtattttgttgatgttcctttaagtcacttaaagaatacttaatagttcctttttttctttatttgttgaaataactaggtgtttaccctagaattctctcgtgttctacatacagttgtatctctgtagtgttgttaattatgtgccactatcatccacttttcctgtaaactagtagatctagaggctcatgcagactcatgttctaatatttttagcaggaatatattagaaggtgataagtacttgcttttgcatcacataaggagtgacctgacttttaagttcccaaccagcctttcacttaaattatgatccacccagctttgatgtggtaattcattagggattacataatgaggattttctaatttatcattctttctgactttattagctgtattctataaaaaactttcactcTTGGAGATTTATCTGAAAGATGAGGCAAAGGGATTCTTGTAAGTATATCCAAAATTAGAAGCCCAGGTCCCTGCTCCTTTTTTTGGAGTCAAGGGTTGCAACCTAGGGCAACTGTAAAATACATGTAAATAGTGAAGAGATAACTCATTTTGAATCCCAGCTCTAtcccttaacctctgaaagctctgtttcctcacctctaaagtgaggataatgaaaatagcatctgcctcctgaggttgtgagactgagataacgtggttgagaacTGGGCACATGTTAATCTATGTTAGCACTAATGTGCTGAGGGCTCTGGCTCtttcttttttctttttcttcttttttttggttttgttttgttttgtttttgtttttgtttttttttgagacggaatctcgctctgtcggagtgcagtggtgcaattttggctcactgcaacctctacctcctgggttcaagtgattctcctgcctcagcctcccaagtagctgggattacaggcatgtggcaccatgcctggctaattttggtatttttagtagagacggggtttctccatgttggtcaggctggtctcgtactcacgacctcaggtgatccacctgcctcagcctcctagagtgctgggattacaggcgtaagccaccgcgcccagccgatcatttctgttttctAGAAAATTATTTTGTCTGTTTCCCCACTAGCATTCCTGATGGTTTTCCAGAGTCCTATCCCCTGAAGTTCTAATTGCTGGCATAATCACACTCTAAAAGGCTGAACCCCAGAATCATTACCTGAAAATTCGTACTACCAGTGGTTCTTCTTCATGATAAATCATGGACAAATTAAGCCTGAGTTTGTAAACTCTTTGGATACCAACTTTCTACCACTCTTGGAAGAGATGGAGGAGGTGTCAGTCATTTTGGTTGATACTAGCCCTAGGCCTGCCTTGTCCCAGGAGTTTCTTCACCTTAATCACAGACCAAATTGCATACTTTTATCTTCGAATCATCTAAAATATAATTTCAAATCACAAGACAGAATAAaataatctttgagagaggcagaaccttagaaaggagatattttatctcatttattttacagatgaagaaagtaaacttcagagagatcaaagtgatttgtctcaggtcacataaccagtggcagaAAGAAGAGAATTGCTGGAATGTCAAGATAAGAATGAATTCTAGGTTTAAAGTTGTTTAAGTATATCCCAAATTAAATATTTCATTCCTGAGCTCTAAAA