Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name ATP5F1E
Plot displaying the genomic locations of a parental gene (in chr20) and its retrocopy(ies). Each line represents a retrocopy.
Specie Homo sapiens
Full Name ATP synthase F1 subunit epsilon
Also known as ATP5E|ATPE|MC5DN3
Coordinate chr20:59025475-59032335
Strand -
Gene summary This gene encodes a subunit of mitochondrial ATP synthase. Mitochondrial ATP synthase catalyzes ATP synthesis, utilizing an electrochemical gradient of protons across the inner membrane during oxidative phosphorylation. ATP synthase is composed of two linked multi-subunit complexes: the soluble catalytic core, F1, and the membrane-spanning component, Fo, comprising the proton channel. The catalytic portion of mitochondrial ATP synthase consists of 5 different subunits (alpha, beta, gamma, delta, and epsilon) assembled with a stoichiometry of 3 alpha, 3 beta, and a single representative of the other 3. The proton channel consists of three main subunits (a, b, c). This gene encodes the epsilon subunit of the catalytic core. Two pseudogenes of this gene are located on chromosomes 4 and 13. Read-through transcripts that include exons from this gene are expressed from the upstream gene SLMO2.[provided by RefSeq, Mar 2011]

Retrocopy(s) from ATP5F1E

Retroname Coord Strand Genomic Region ENSG
ATP5F1EP2 chr13:27945205-27945573 + Intergenic
ENSG00000180389 UCSC
ATP5F1EP1 chr4:105532491-105532661 + Intergenic
ENSG00000250922 UCSC

Expression

Transcript Sequences

>NM_006886.4
CTTCCTGCGGCTGAACCGCCCGGCTGAGCCGACATTGCCGGCGTCTTGGCGATTCGGCCCGACGAGCTCCGCTTTCGCTACAGCATGGTGGCCTACTGGAGACAGGCTGGACTCAGCTACATCCGATACTCCCAGATCTGTGCAAAAGCAGTGAGAGATGCACTGAAGACAGAATTCAAAGCAAATGCTGAGAAGACTTCTGGCAGCAACGTAAAAATTGTGAAAGTAAAGAAGGAATAATCTACCCTGACTAAAGCTTGAAATGCTACATTTCCAAGGTGAAGATGTGTGGGCACATGTTATGGCAGATTGAAAAGGATCTCATTCCATGGGAAAAAAAAAAATCCTGTCTTGTTCATAAATTGACAATGTCAATAAATTGAAATATGGTTCACTGTTACTCTTGATTTTAGTTTGTGAGACTTTTTCATTTTCTTTAAAGGAACTGTCTGCACAGCTGCATGATTATGGCCATGTGAACCAGGGTTTCTTAAAAGCAGGGGAAGCCAGATTTAATATTTAGTGACCAAAGGGATACAGAAAGCATTTTGAAAATGTCTCAAAATAGTTGTTTCATGACATTAATTGGTGATCAAAATTATCTGCTGTCATTGAGGCTTCGTAGTCCCTTATTTTTGAATTGTTGTCATGTCAGAATAATGACATGGTTATCAGTAACAAATGGAAATAATTATTAAATACTAAAAGTGTAGATTAGAAGAAGAAATACTAAATTGTACTTGTTTTGTATTGTGCACTTAAAGCCTATAGATAAGAACGGTTACAGAATTTAAGCACAAAGTGTTTTTCACATTGTTTTGTAAATGAATCTTTATACTCTGGTAGCATTTCTCATaggaaatgaggcaaagctattgaataacttgctcattgagttgatggccaaactgaaattaaaacctaggagttttgactgcaagtctgGGACACGGTGACCACAACAGCAGTTTCGTGGTATTTCCATAGTGATTCATTCATTCATTATTTAGGGATGAAAAATTGTTGCAAGTTATGTTTTTATCTTTCTTTGAAACTTGAAAGGGCTTGGGCAAGTAAAACACCATTGCAAAGTTAACTGCCTGATTTTAACTGTTTTTGGAGACTGGAGAAATAAATTTGAACTGGAAATTTTGAAACACCATTCTAGGATCAGTTCTCACATGGTACTTAAGCTCACAATGATTTATCAGGGCCACTGTCAGCAATGCCGAGGATAAGCCGAAAAGAACATCTTTGTTCTCGGCTTCTGGGAATGACTTATTGTCCCGACACTTGACCTGTAGGTTTTACTGAATTCTCAGCACAGAGCGAGCAGGGAGGCAGAGCCAATTGAGTGGAAGAGGGTGCCTCTGGAAAACAGCAGGTTAGGAGCCCTTGGAGTCCTCCGCCTCGGAGCTGTCATCCTGCTGTTGGCAAGTTAGGGCACCTCAGTTCAGTGCTGTGGCCCCCAAGATTAAGGTACTAGGAAGTATCCTCCATTACAGGGAACAGGAATAAATGAATCAAAAAGCTATCGGGCCTTTTTGACATGGGACGAATAAAGTAACTAATAGGCAAAGGGGCTAAATGATTTCCAGTCAAGTAATTAGAGATAAGTCATTTATTAAGGAGGCAGATGGGGTATTATTGGTATATAGATGGCATAGTAGATTGCTAGTATATTGGTAGATTATTGGTATATAGATGGTATGTTAAGGAGGCAGATGGGGTATTACTGGTATATAGATGGTATGGTAGATTGGTAGTATATTGGCAGATTATTGGTATATGGTATGTTGAGGCAGATGGGGTATTACTGGTATATAGATGGCATAGTAGATTGGTAGTATATTGGTAGATTATTGGTATAGAGATGGTATATTATTAAGGAGGCAGATGGGGTAATTAGAGGTGAGACTTAGGGACAGGGCTTGTGATATGGAAAGGAGTGAAGTCACTGAGTAAAAGACAAGTTTACTGTCAGCAGAGATTCTTAGAGGCTCTTTTCTCCGTGATTAAAAAAAAATCCTAAACCAGTAGTATAATAAACTTCCTGCCTCCAGCAGTGCTGGGTAGCTGGCAGGATGACTGTGCCCAGTGATGAGGTGACCCCAGTCAGACCAACTTAATGAGTATCCCACTAATTAGTTGGATGATGTTTGAAGCTGTCAGTTAATCTCTTAGTTCACATCGTTCTTGTGAGCAAAGTGAAGGAATCGGATAAGCTCTAAATTTCGGTGATGCTGCTGCTCTGAGAGACCAAGGTCGCTGGAGCAACCGTACTGCTAAAGGATAAGCTCTTCAAAATCAAAAGGGACAGATTTCTTAAGTTTCTAGTTTGTTTTGTGTTTTTACATCTATTTCTACCATACGAAAGAGTAGGATGGTGAGATGCATTTCTAAATATTTTTAACTACTCAGTCTGGATGGTTAGGCTTCAAGAAAAGGAATTTATTTAGTCTGAAATAAAGCAATTTTGCCATTTAAAATTGAATTACTTTGTAGTTTAATGATTACTATTGAGCAAACAAATCTTTACAGTAATATAAGTCAGCAAAAGTTTTTTAAAAGGTTTAAATCCCTCCTTCCTTACATCTATTTCATTGCTTTTTTAGGTTTGGGAAGTAAAGCACCAGAGGAAGCATGTGTAAATCCTTGTATAATCGCAGGCTGTAAGTCTTTAGCATCTCAGGAAGTTACTAACTTCAAACTAAGTATATAGGTAGAGTTTCTTACTAAATCTAGTGCTTCTTGAACCACAAGTAGAAAGCATTTAAAACATGAATGTTGTTTTGTGTTTTTTGAAGTTTGTAAATAGAAGACTTGTTGATGATCCGATGGCAAGGTATTTTTCTCTTGGTATGTATTTTAGTTATTTCCTCGTGATGCATAAGTGAAAAGAGTGAAGTTTCTCAGAATGAGCAACTGTCATCCATCTACCTGCTATTTTATTATTGCTGATTACAAAAGCAAATCAAGAGATGAGAACCCAGTTGCCTGCAAGTAAATATTTACTGCATTGAGGGTCGGAGCATTTTCCCATTACCGGTTATCCATGGATCAAATAGTGTATCTCAGTGGTAATTCTAGAGGGCCATTAAAACCCTGATGGTGCTGGAAGAGATGGCAGTGCTGCATGTCAGAAATAGGTAAACTGTAATTAAGAAGTTACAGATGATTTGATTACGCTCTTGTGTATTTGGTCCTGTTATAATGTGAGCAGATTAAAATCATGTAGTGCTTAAAGCTATGTCATTATGCAAACATTTATGGCAACTTCTGCAAATTAATTTGAACTGTAAAAGTTCCCTAATGAGACGATGTCCTCCATAACTGAGAAGGACACTGCAGCCATTGCTGCTTAATTCCTGCATTTGAATGGTTGCCGAGCGCATGGTGTGCCCTTTCTCAAAGAGCAGAGAGGCTGCAGAGCATTTTGGGGGGTGATGACTGAATGAAAGTGAAAAGACCATTTCAAAATAGCCTTTAAAAGGAAAGCCAAGGATGATTATTAATGAATTCCTGGGATCTAACAGTAGTAAGAAATTTAAACTATATAAACATATATGTTAAAGGCTAGCTCTTCAGAAATAAAGATCAGAAGACTGCA