Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Setd3
Plot displaying the genomic locations of a parental gene (in chr12) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name SET domain containing 3
Also known as 2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e
Coordinate chr12:108072690-108145596
Strand -
Gene summary Enables N-methyltransferase activity and RNA polymerase II-specific DNA-binding transcription factor binding activity. Involved in actin modification; peptidyl-histidine methylation; and regulation of uterine smooth muscle contraction. Acts upstream of or within positive regulation of muscle cell differentiation and positive regulation of transcription by RNA polymerase II. Located in chromatin. Orthologous to human SETD3 (SET domain containing 3, actin histidine methyltransferase). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Setd3

Retroname Coord Strand Genomic Region ENSG
Setd3P4 chrX:88153689-88156063 - Intergenic
 ENSMUSG00000081033 UCSC
Setd3P1 chr1:33139901-33142478 + Intergenic
 ENSMUSG00000100481 UCSC
Setd3P2 chr2:129010522-129013201 + Intergenic
 ENSMUSG00000082274 UCSC
Setd3P3 chrX:136102687-136107615 - Intragenic
 ENSMUSG00000082955 UCSC

Expression

Transcript Sequences

>NM_001364270.1
cgccgccgccgcctggGGGTTGGTTGAGGCGGACGGTGGGGTCCCGGCCGGAGTGTGGCGCCGCCGCTGCGCGAAGACGAAGCGGGCAGTCAGAAAATGGGTAAGAAGAGTCGAGTGAAAACTCAGAAATCAGGTACTGGGGCTACAGCCACTGTGTCACCAAAGGAAATTTTGAACCTGACAAGTGAGCTGTTGCAGAaatgtAGCAGTCCTGCACCCAGCCCAGGGAAAGAATGGGAAGAGTACACGCAGATCCGGGCTCTGGTTGAGAAAATACGGAAGAAGCAAAAAGgcaGAAGAATTATTTTTATGGGTTCCACGAAAGTTACTAATGACTGTTGAATCTGCTAAGAATTCAGTATTGGGGCCCCTGTATTCTCAAGACCGAATTCTCCAAGCTATGGGAAACATTGCACTGGCCTTTCATCTGCTGTGCGAGCGAGCCAGCCCCAACTCTTTCTGGCAGCCATACATTCAGACCCTCCCCAGTGAATATGACACCCCTCTCTACTTCGAAGAAGAGGAAGTACGCTGTCTTCAGTCAACACAAGCCATCCATGATGTCTTCAGCCAGTATAAAAACACAGCACGCCAGTACGCCTATTTCTATAAAGTCATCCagATCACAACTGGCTATAACCTGGAAGATGACCGCTGTGAGTGTGTGGCTCTGCAGGACTTTCAGGCTGGAGATCAGATTTACATTTTTTATGGCACTCGGTCAAATGCAGAGTTTGTGATCCACAGTGGTTTTTTCTTTGACAATAATTCCCACGACAGAGTGAAAATTAAGCTGGGCGTGAGTAAAAGTGACAGGCTCTACGCCATGAAGGCTGAGGTCCTGGCTCGGGCTGGCATCCCAACATCCAGTGTTTTTGCGTTGCATTCCACTGAGCCGCCCATCTCTGCCCAGCTTCTAGCTTTTCTCCGAGTATTCTGCATGACCGAAGAGGAGCTGAAAGAGCATTTGCTAGGGGACAGCGCCATTGACAGGATCTTCACTCTGGGGAACGCAGAGTTTCCTGTCAGCTGGGACAATGAGGTCAAACTTTGGACATTTCTGGAAGATAGAGCCtcacttcttttaaaaacatataagaCAACAATTGAGgaagatAAGATCGTCTTGAAAAATCCTGACCTCTCTGTCCGGGCCACAATGGCCATCAAATTGCGCTTGGGTGAAAAGGAGATTTTGGAAAAAGCAGTGAAGAGTGCGGCCGTGAACCGGGAGTACTACCGTAAACACATGGAGGAGAGGGCACCACTGCCCAGATACGAGGAGAGTGACCTGGGGCTCTTGGAGGGTGGTGTGGGGGACTCAAGGCTCCCTCTGGTCCTGAGAaagttggaggaggaagcaggtgTGCAGGAGTCTCTGAGCCTCACAGAGACTGTCAGCAAAGTCAAGGCTGCTGAAAATGGGCTTGTCAATGGGGAAAACTTGATCCCTAATGGGACCAGGTCTGAAAATGAAAGCTTAAGCCCAGAAGAAAGTGAAAACGTGACTGGAGAAGAGTCTTCAGGCAGCATGGCCAAGGTGAAGGAGCGACTTTGAGATGCTCATGGAATCCAGTCGAGCAGAAGTTTCGGACAGCCCACCACATCACCATGTTCCttgttaacatttttcttttcgcAGAGAGGAAAATATGTTTTTGCTGCTTTATATAAAAgtgatttttaagttattttaaagaTCTAGCTTCCCTATTTGATTAAGATTGCCATCTTGCTTTTGGGCAGAAAAAAGTAGTGAATAGCAGCGGAGAAAAGAGGAGGCACCCTTGAATGACTGCAGACCAGCTGTGGGCACTCGCTGCTCCTCCAGGAAAGGGTGAGGTCCGTGCTCAGCTATGCTTGCAGGCCTGCTGTCCTCACTCCAGAATGAgtgctggctctgcctctggctgCAGAGTTGAGGTTGGACTCTGGAGTGGATGGTGGAGATGAGGCACAGTGGAGAGAAAGCTGGGCTAGGCCATTGAAATAGAGGCTGGGTTTTTTAATAAGAATATCCCCAGTACCAAAAGAAAAGGTGAGGTGGCAACCTGATTTCTAATGGCTTAAAATGTTGATGATGATCCTaattacataaacacacacatatatctagtGATTTCTAAggatttgtttactttttgtgTTCTGTTTTGCTGTATTAAAAACTTGTCCTTTTCCTTAAATCAAAGTAGGACTCGAGTCCTCGTTTTTCACGCTGGCTTTGTTTCAGAGGTATACTGACTCCAGTGGTGTCAGGATGAGGTGGCCCCTGGCTTTCTGGTTCACAACAAGCTAGAGATTTTCAAAGCTACCCTTTTGAGTAAAACCCCTTATTAAAAGAGAAACCATgactggt
>NM_028262.3
GGCTGCCGTCCAGCCCCTCCCGTccggccgccgccgccaccgccgccgccgccgcctggGGGTTGGTTGAGGCGGACGGTGGGGTCCCGGCCGGAGTGTGGCGCCGCCGCTGCGCGAAGACGAAGCGGGCAGTCAGAAAATGGGTAAGAAGAGTCGAGTGAAAACTCAGAAATCAGGTACTGGGGCTACAGCCACTGTGTCACCAAAGGAAATTTTGAACCTGACAAGTGAGCTGTTGCAGAaatgtAGCAGTCCTGCACCCAGCCCAGGGAAAGAATGGGAAGAGTACACGCAGATCCGGGCTCTGGTTGAGAAAATACGGAAGAAGCAAAAAGGTCTGTCTGTTACTTTTGATGGGAAAAGAGAAGATTACTTCCCTGATCTAATGAAATGGGCCTCTGAAAACGGGGCTTCTGTCGAGGGTTTTGAAATGGTTAACTTCAAAGAAGAGGGCTTTGGTTTGAGAGCAACAAGAGACATCAAGgcaGAAGAATTATTTTTATGGGTTCCACGAAAGTTACTAATGACTGTTGAATCTGCTAAGAATTCAGTATTGGGGCCCCTGTATTCTCAAGACCGAATTCTCCAAGCTATGGGAAACATTGCACTGGCCTTTCATCTGCTGTGCGAGCGAGCCAGCCCCAACTCTTTCTGGCAGCCATACATTCAGACCCTCCCCAGTGAATATGACACCCCTCTCTACTTCGAAGAAGAGGAAGTACGCTGTCTTCAGTCAACACAAGCCATCCATGATGTCTTCAGCCAGTATAAAAACACAGCACGCCAGTACGCCTATTTCTATAAAGTCATCCagACCCATCCTCATGCCAACAAACTGCCCTTGAAGGAGTCTTTCACTTACGAGGACTACAGGTGGGCCGTCTCATCAGTTATGACACGGCAAAACCAAATTCCTACAGAGGATGGTTCCCGGGTGACCTTGGCTCTGATTCCTTTATGGGACATGTGCAATCATACCAATGGCCTGATCACAACTGGCTATAACCTGGAAGATGACCGCTGTGAGTGTGTGGCTCTGCAGGACTTTCAGGCTGGAGATCAGATTTACATTTTTTATGGCACTCGGTCAAATGCAGAGTTTGTGATCCACAGTGGTTTTTTCTTTGACAATAATTCCCACGACAGAGTGAAAATTAAGCTGGGCGTGAGTAAAAGTGACAGGCTCTACGCCATGAAGGCTGAGGTCCTGGCTCGGGCTGGCATCCCAACATCCAGTGTTTTTGCGTTGCATTCCACTGAGCCGCCCATCTCTGCCCAGCTTCTAGCTTTTCTCCGAGTATTCTGCATGACCGAAGAGGAGCTGAAAGAGCATTTGCTAGGGGACAGCGCCATTGACAGGATCTTCACTCTGGGGAACGCAGAGTTTCCTGTCAGCTGGGACAATGAGGTCAAACTTTGGACATTTCTGGAAGATAGAGCCtcacttcttttaaaaacatataagaCAACAATTGAGgaagatAAGATCGTCTTGAAAAATCCTGACCTCTCTGTCCGGGCCACAATGGCCATCAAATTGCGCTTGGGTGAAAAGGAGATTTTGGAAAAAGCAGTGAAGAGTGCGGCCGTGAACCGGGAGTACTACCGTAAACACATGGAGGAGAGGGCACCACTGCCCAGATACGAGGAGAGTGACCTGGGGCTCTTGGAGGGTGGTGTGGGGGACTCAAGGCTCCCTCTGGTCCTGAGAaagttggaggaggaagcaggtgTGCAGGAGTCTCTGAGCCTCACAGAGACTGTCAGCAAAGTCAAGGCTGCTGAAAATGGGCTTGTCAATGGGGAAAACTTGATCCCTAATGGGACCAGGTCTGAAAATGAAAGCTTAAGCCCAGAAGAAAGTGAAAACGTGACTGGAGAAGAGTCTTCAGGCAGCATGGCCAAGGTGAAGGAGCGACTTTGAGATGCTCATGGAATCCAGTCGAGCAGAAGTTTCGGACAGCCCACCACATCACCATGTTCCttgttaacatttttcttttcgcAGAGAGGAAAATATGTTTTTGCTGCTTTATATAAAAgtgatttttaagttattttaaagaTCTAGCTTCCCTATTTGATTAAGATTGCCATCTTGCTTTTGGGCAGAAAAAAGTAGTGAATAGCAGCGGAGAAAAGAGGAGGCACCCTTGAATGACTGCAGACCAGCTGTGGGCACTCGCTGCTCCTCCAGGAAAGGGTGAGGTCCGTGCTCAGCTATGCTTGCAGGCCTGCTGTCCTCACTCCAGAATGAgtgctggctctgcctctggctgCAGAGTTGAGGTTGGACTCTGGAGTGGATGGTGGAGATGAGGCACAGTGGAGAGAAAGCTGGGCTAGGCCATTGAAATAGAGGCTGGGTTTTTTAATAAGAATATCCCCAGTACCAAAAGAAAAGGTGAGGTGGCAACCTGATTTCTAATGGCTTAAAATGTTGATGATGATCCTaattacataaacacacacatatatctagtGATTTCTAAggatttgtttactttttgtgTTCTGTTTTGCTGTATTAAAAACTTGTCCTTTTCCTTAAATCAAAGTAGGACTCGAGTCCTCGTTTTTCACGCTGGCTTTGTTTCAGAGGTATACTGACTCCAGTGGTGTCAGGATGAGGTGGCCCCTGGCTTTCTGGTTCACAACAAGCTAGAGATTTTCAAAGCTACCCTTTTGAGTAAAACCCCTTATTAAAAGAGAAACCATgactggt