Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name MDH1
Plot displaying the genomic locations of a parental gene (in chr11) and its retrocopy(ies). Each line represents a retrocopy.
Specie Bos taurus
Full Name malate dehydrogenase 1
Also known as KAR
Coordinate chr11:62023287-62047726
Strand +
Gene summary This gene encodes an enzyme that catalyzes the NAD/NADH-dependent, reversible oxidation of malate to oxaloacetate in many metabolic pathways, including the citric acid cycle. Two main isozymes are known to exist in eukaryotic cells: one is found in the mitochondrial matrix and the other in the cytoplasm. This gene encodes the cytosolic isozyme, which plays a key role in the malate-aspartate shuttle that allows malate to pass through the mitochondrial membrane to be transformed into oxaloacetate for further cellular processes. Alternatively spliced transcript variants have been found for this gene. A recent study showed that a C-terminally extended isoform is produced by use of an alternative in-frame translation termination codon via a stop codon readthrough mechanism, and that this isoform is localized in the peroxisomes. [provided by RefSeq, Feb 2016]

Retrocopy(s) from MDH1

Retroname Coord Strand Genomic Region ENSG
MDH1P1 chr12:28467131-28468415 + Intragenic
N/A UCSC
MDH1P2 chr14:76382463-76382743 - Intergenic
N/A UCSC

Expression

Transcript Sequences

>NM_001034628.3
GGGAGGATAAAGTCTCCGTAGCGGTGGGGAGGGTGTTGTAGCTAAGGGGTCCGTCTCTCCTCCCTCGAGTTACACGCGCCTCCCCTCCCGCCAATTGCTGGGCGCCATCCGGCAGGTCCTTTTCTCTGGAGCCCAAATCGTCCGCTTGTCGCAATCCTCCAATCACAACGGCCCGCCCTCGGGGACTACTTTGCAATCGGGGAAGGGCGCAGGGAGCAGAGCGTGAGAAGAAACTCTGAGCTCGGGAAGTGTAGTTCTAACACTTGAAGGAATTGCATTGGAGATTGCACCGGAATCAGGGCAGCTTAAACTACAGTTCCCAGAGGGCCCCGCGGTCGGGAGCCGAGTTTTTTCTTTTCTAACACCGCTCGCCTTTTCCGAGTCGGTTCCACGATAGAGGTGACCCGACTGTCTGAGGCTGATTCGGCAAGTGCAGAAAGTGTCCGCGCCCTTCCCAATCATGTCTGAACCAATCCGAGTCCTTGTGACTGGAGCAGCTGGTCAAATTGCATATTCGCTGCTATACAGTATTGGAAATGGATCTGTCTTCGGTAAAGACCAGCCTATCATTCTCGTGCTGTTGGATATCACTCCAATGATGGGTGTCCTGGATGGTGTCCTGATGGAGCTGCAAGACTGTGCCCTTCCCCTCCTGAAAGATGTCATCGCAACAGATAAAGAAGAGATTGCCTTTAAAGACCTGGATGTGGCCATTCTTGTGGGCTCCATGCCAAGAAGGGATGGCATGGAGAGGAAAGATTTACTCAAAGCAAATGTGAAAATCTTCAAATGCCAGGGTGCAGCCTTGGACAAATATGCCAAGAAGTCAGTTAAGGTTATTGTGGTGGGAAATCCAGCCAATACCAACTGCCTGACTGCCTCCAAGTCAGCACCATCCATCCCCAAGGAGAACTTCAGTTGCTTGACTCGTTTGGATCACAACCGAGCTAAAGCTCAGATTGCTCTTAAACTTGGAGTGACTTCTGATGATGTAAAGAATGTCATCATCTGGGGAAACCATTCCTCAACTCAGTATCCAGATGTCAACCATGCCAAAGTGAAACTGCAAGGAAAGGAAGTTGGTGTTTACGAAGCTCTGAAAGATGACAGCTGGCTCAAGGGAGAATTCATCACGACTGTGCAGCAGCGCGGTGCTGCCGTCATCAAGGCACGAAAACTGTCCAGTGCAATGTCGGCTGCAAAGGCCATCTGTGACCACGTCAGAGACATCTGGTTTGGAACCCCAGAGGGAGAGTTTGTGTCCATGGGCATTATCTCCGATGGCAACTCCTATGGTATTCCTGATGATCTGCTTTACTCGTTCCCCGTTACAATCAAGGATAAGACCTGGAAAGTTGTTGAAGGTCTCCCTATTAATGACTTCTCACGTGAGAAGATGGATCTTACTGCAAAGGAACTGGCAGAAGAGAAAGAAACTGCATTTGAATTTCTTGCCTCTGCCTGACTAGACAATCATTTCGATGTTACTAAATGCCCCAAAGCTGAAGAATCTAAATGTCGTCTTTGACTCTAGTACAAAATAATAATAATGCCATATTTAAATTACTTGTGAAAAACAACACACTTTAAAGATTGTGTGCTTCTTGGTACAAGTTTGTGACAGTTTATCATCATGCTGTTAGTGTCGCATTCTAAAATAAATATATATTCAAGTGAAGATGACTTGGACTCTAA