Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Ssbp1
Plot displaying the genomic locations of a parental gene (in chr4) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name single stranded DNA binding protein 1
Also known as Mt-SSB|Ssbp|mtSSB
Coordinate chr4:68634844-68645112
Strand +
Gene summary Predicted to enable chromatin binding activity; protein homodimerization activity; and single-stranded DNA binding activity. Predicted to be involved in several processes, including DNA-dependent DNA replication; positive regulation of DNA helicase activity; and positive regulation of mitochondrial DNA replication. Predicted to act upstream of or within mitochondrion morphogenesis. Predicted to be located in mitochondrion. Predicted to be active in mitochondrial nucleoid. Human ortholog(s) of this gene implicated in optic atrophy. Orthologous to human SSBP1 (single stranded DNA binding protein 1). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Ssbp1

Retroname Coord Strand Genomic Region ENSG
Ssbp1P2 chr4:126369941-126370226 + Intergenic
 N/A UCSC
Ssbp1P1 chr2:183115093-183115245 - Intragenic
 N/A UCSC
Ssbp1P5 chr19:57715068-57715350 + Intergenic
 N/A UCSC
Ssbp1P3 chr8:62563150-62563719 - Intergenic
 N/A UCSC
Ssbp1P4 chr13:45149655-45150232 + Intergenic
 N/A UCSC
Ssbp1P6 chr20:18343043-18343545 - Intergenic
 N/A UCSC

Expression

Transcript Sequences

>NM_183328.3
GCGAGCCGCTGGCAGTCTGGGCTTGCGCGTCAGGAAAAGCCTAAAGATTAGGTTATAAGAAAAACCGAAGCCATGTTTCGAAGACCTGTGTTACAGGTATTTCGTCAGTTTGTAAGACAGGAGTCTGAAGTAGCCAGCAGTTTGGTTCTTGAACGATCTTTGAATCGTGTTCAGTTACTTGGGCGAGTAGGTCAGGACCCTGTCATGAGACAGGTGGAGGGAAAAAACCCAGTCACGATATTTTCTCTAGCAACAAATGAGATGTGGCGATCAGGGGACAATGAAGCATACCAAATGGGTGACGTCAGTCAAAAGACAACATGGCACAGAATATCAGTGTTTCGGCCAGGCCTCAGAGATGTGGCTTATCAGTATGTGAAAAAGGGGGCTCGTATATTTGTGGAAGGCAAAGTGGACTATGGTGAATACATGGATAAAAACAATGTGAGGCGGCAAGCAACAACAATCATAGCTGATAACATTATATTTCTGAGTGACCAGGCAAGAGAAAAGCCATAGAACGGATGATTCTTCGTTGATCATTGTTTGGTACAGTCTCCTTTGCAAATCATGTACAGTCTAT
>XM_008762824.2
TCCTGTTTTTCCTTGCCTATCGCGAGCTTTGCCGGCTCTGTGCGCCGGAAGCGAGCCGCTGGCAGTCTGGGCTTGCGCGTCAGGAAAAGCCTAAAGATTAGGTTATAAGAAAAACCGAAGCCATGTTTCGAAGACCTGTGTTACAGGTATTTCGTCAGTTTGTAAGACAGGAGTCTGAAGTAGCCAGCAGTTTGGTTCTTGAACGATCTTTGAATCGTGTTCAGTTACTTGGGCGAGTAGGTCAGGACCCTGTCATGAGACAGGTGGAGGGAAAAAACCCAGTCACGATATTTTCTCTAGCAACAAATGAGATGTGGCGATCAGGGGACAATGAAGCATACCAAATGGGTGACGTCAGTCAAAAGACAACATGGCACAGAATATCAGTGTTTCGGCCAGGCCTCAGAGATGTGGCTTATCAGTATGTGAAAAAGGGGGCTCGTATATTTGTGGAAGGCAAAGTGGACTATGGTGAATACATGGATAAAAACAATGTGAGGCGGCAAGCAACAACAATCATAGCTGGTAAGAAGCCCGTGGTACGCAGCGTTTCTTGTTCATTAAAAGGCTTGGCATAATATAGGCCACTTTCCCGGGGGCTCTAAGTACCCCTGATGGCAACGCTACAGGAAACTCCCCAGAGGACTTTGATACTTTTCATTTTACTGTTTGCTAACACTGTCCACATTTATTTATTCCTCTAAAATTGTACTCACATGTTTAGTTCAGGAGGAACTCTGCATAGAGTATAATAGCAACTTGCTCCTGCAGTACAGATGTAACTGGAAGCATTTACTCTCAGTGTCTTTAAACACTGTACAAGCACATATTCCAAGGCAGCTGCAGAAGGGTGATGTTAGGAGTTTGAAACTGAACGTGCAACGACCTTCATTTGAAATTTAAAAACTTAGGTCTTTAAACAAAACAACATGGACTGCATAGACGTAAAACAATATGATAGAGTTCAAACCTCTAAAGTTTTAGAAGAATTTTGGAAACAATACAGCTGTTTATATATCTGTAACTTAACCTGAAGAAATGCTTTTTTGTATGAAATTATATATAGATTAATGAAATATAGATAGCTTACCAATTTGATACCATTTTTTTAAAAGTACTGCTTAACAGATTTTAATAGTATCATGAAAATTAAAATGTTACTAAATACATCTTTTAATGAGATAGACATATTTTATTACTTCTTGAAGAAGTTGCTAAAATTTATAAGCCTTAATTTGCTTATTTTGTTTTTGTTATTAAACACCTAGAAACATGTTTTGTAGATAGGAGTGAAAAATCTTAGTGAGATGTGCTATAACAGTGCTCTGTTGTCTGAAGCGTCTGAGTAGAGAGAATGGCGGCTTGGCCACTCGTGTGCTCACCACTTAGCACTAATCGGCTGCTTTTTTCTCTTCCAGGATCAGTTGGAAGTGACATTTTCTATTTTATCCATAAATGTTAGCTTGTATCACTGAAAGAAAAAGTTGTGTTGTAACACGGTTATTTTACCCAATGTTGAGATTATTATGGCATTTCTGTATAAAAAGGATGTCATTGTGCTCACTCTTCCTTGGATTCCCAGTTTTCTTATCTGTATGCTTTTAAAAAATCCTTTTCTTTCCCCTTGTTCCAATGGTTAT
>XM_008762827.1
GAGGAGAGAAGGTTGAGACAAAGTTGTGAGTCCGTAGTGCACGAGCGCGTGCGGGCCTGGGGAGCAGGTGTGCGGCTCCTTGCTGGAGTCTCAGTGTCCCCGCTGTTCCCTGTGCAGCCTGCGATCGCCACTTTAGAGGAAAAGTACCCGCTTATCCCCGCGGCAAGGCTGGGAAGCCGGGCTTACTCAGCGCTAACGGGAACGAAGGAAAAGCCTAAAGATTAGGTTATAAGAAAAACCGAAGCCATGTTTCGAAGACCTGTGTTACAGGTATTTCGTCAGTTTGTAAGACAGGAGTCTGAAGTAGCCAGCAGTTTGGTTCTTGAACGATCTTTGAATCGTGTTCAGTTACTTGGGCGAGTAGGTCAGGACCCTGTCATGAGACAGGTGGAGGGAAAAAACCCAGTCACGATATTTTCTCTAGCAACAAATGAGATGTGGCGATCAGGGGACAATGAAGCATACCAAATGGGTGACGTCAGTCAAAAGACAACATGGCACAGAATATCAGTGTTTCGGCCAGGCCTCAGAGATGTGGCTTATCAGTATGTGAAAAAGGGGGCTCGTATATTTGTGGAAGGCAAAGTGGACTATGGTGAATACATGGATAAAAACAATGTGAGGCGGCAAGCAACAACAATCATAGCTGATAACATTATATTTCTGAGTGACCAGGCAAGAGAAAAGCCATAGAACGGATGATTCTTCGTTGATCATTGTTTGGTACAGTCTCCTTTGCAAATCATGTACAGTCTATAGTTTAAAGACAAAAATTAAAATTTTTATATAAAATGAGTGATAA