Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name MRPS18A
Plot displaying the genomic locations of a parental gene (in chr6) and its retrocopy(ies). Each line represents a retrocopy.
Specie Homo sapiens
Full Name mitochondrial ribosomal protein S18A
Also known as HumanS18b|MRP-S18-3|MRP-S18-a|MRPS18-3|S18bmt|S18mt-a
Coordinate chr6:43671202-43687793
Strand -
Gene summary Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that belongs to the ribosomal protein S18P family. The encoded protein is one of three that has significant sequence similarity to bacterial S18 proteins. The primary sequences of the three human mitochondrial S18 proteins are no more closely related to each other than they are to the prokaryotic S18 proteins. A pseudogene corresponding to this gene is found on chromosome 3p. Alternative splicing results in multiple transcript variants.[provided by RefSeq, Jul 2010]

Retrocopy(s) from MRPS18A

Retroname Coord Strand Genomic Region ENSG
MRPS18AP1 chr3:48256039-48256949 - Intragenic
ENSG00000229759 UCSC

Expression

Transcript Sequences

>NM_018135.4
AGGTTTTTGAAGATGGCGGCCCTCAAGGCTCTGGTGTCCGGCTGTGGGCGGCTTCTCCGTGGGCTACTAGCGGGCCCGGCAGCGACCAGCTGGTCTCGGCTTCCAGCTCGCGGGTTCAGGGAAGTGGTGGAGACCCAAGAAGGGAAGACAACTATAATTGAAGGCCGTATCACAGCGACTCCCAAGGAGAGTCCAAATCCTCCTAACCCCTCTGGCCAGTGCCCCATCTGCCGTTGGAACCTGAAGCACAAGTATAACTATGACGATGTTCTGCTGCTTAGCCAGTTCATCCGGCCTCATGGAGGCATGCTGCCCCGAAAGATCACAGGCCTATGCCAGGAAGAACACCGCAAGATCGAGGAGTGTGTGAAGATGGCCCACCGAGCAGGTCTATTACCAAATCACAGGCCTCGGCTTCCTGAAGGAGTTGTTCCGAAGAGCAAACCCCAACTCAACCGGTACCTGACGCGCTGGGCTCCTGGCTCCGTCAAGCCCATCTACAAAAAAGGCCCCCGCTGGAACAGGGTGCGCATGCCCGTGGGGTCACCCCTTCTGAGGGACAATGTCTGCTACTCAAGAACACCTTGGAAGCTGTATCACTGACAGAGAGCAGTGCTTCCAGAGTTCCTCCTGCACCTGTGCTGGGGAGTAGGAGGCCCACTCACAAGCCCTTGGCCACAACTATACTCCTGTCCCACCCCACCACGATGGCCTGGTCCCTCCAACATGCATGGACAGGGGACAGTGGGACTAACTTCAGTACCCTTGGCCTGCACAGTAGCAATGCTGGGAGCTAGAGGCAGGCAGGGCAGTTGGGTCCCTTGCCAGCTGCTATGGGGCTTAGGCCATGCTCAGTGCTGGGGACAGGAGTTTTGCCCAACGCAGTGTCATAAACTGGGTTCATGGGCTTACCCATTGGGTGTGCGCTCACTGCTTGGGAAGTGCAGGGGGTCCTGGGCACATTGCCAGCTGGGTGCTGAGCATTGAGTCACTGATCTCTTGTGATGGGGCCAATGAGTCAATTGAATTCATGGGCCAAACAGGTCCCATCCTCTTCATGACAGCTGTGAGCTCCTTACTGTGGGAGAGCTGCAGGGAGCCAAGGTGGGCTGCCTGACACACTTGCCGCTCTCGTGTGAATCCAAGAAACTGCGTTCCTCAAA