Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Set
Plot displaying the genomic locations of a parental gene (in chr2) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name SET nuclear oncogene
Also known as 2610030F17Rik|5730420M11Rik|I-2PP2A|StF-IT-1|TAF-I
Coordinate chr2:29952008-29962589
Strand +
Gene summary Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to act upstream of or within negative regulation of neuron apoptotic process. Located in nucleus. Is expressed in several structures, including branchial arch; central nervous system; sensory organ; skin; and tooth. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability. Orthologous to human SET (SET nuclear proto-oncogene). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Set

Retroname Coord Strand Genomic Region ENSG
SetP16 chr12:93967732-93968764 - Intergenic
ENSMUSG00000113818 UCSC
SetP12 chr7:99646124-99646383 + Intergenic
ENSMUSG00000109384 UCSC
SetP24 chrX:76760395-76761631 - Intergenic
ENSMUSG00000081358 UCSC
SetP23 chrX:119024662-119026183 + Intergenic
ENSMUSG00000084172 UCSC
SetP9 chr6:23234989-23236316 + Intergenic
N/A UCSC
SetP22 chr18:34554651-34555583 - Intragenic
N/A UCSC
SetP2 chr1:44963513-44964053 - Intergenic
ENSMUSG00000101251 UCSC
SetP3 chr1:94132162-94132872 + Intergenic
ENSMUSG00000100990 UCSC
SetP14 chr12:40933553-40934686 - Intergenic
ENSMUSG00000113510 UCSC
SetP15 chr12:88033239-88034352 + Intergenic
ENSMUSG00000113419 UCSC
SetP17 chr14:36341431-36341754 + Intergenic
ENSMUSG00000114779 UCSC
SetP18 chr15:38243403-38244526 - Intergenic
ENSMUSG00000115057 UCSC
SetP19 chr15:84892268-84893400 + Intergenic
ENSMUSG00000116343 UCSC
SetP20 chr16:15269685-15271389 + Intergenic
ENSMUSG00000116423 UCSC
SetP21 chr17:82263119-82263739 - Intergenic
ENSMUSG00000117397 UCSC
SetP4 chr3:34237384-34239119 + Intergenic
ENSMUSG00000105739 UCSC
SetP5 chr4:19298259-19299384 + Intragenic
ENSMUSG00000082320 UCSC
SetP6 chr4:34380439-34380910 - Intergenic
ENSMUSG00000081384 UCSC
SetP7 chr4:93153016-93154597 - Intergenic
ENSMUSG00000082325 UCSC
SetP8 chr5:89646158-89647911 - Intergenic
ENSMUSG00000106534 UCSC
SetP10 chr6:7643906-7644366 + Intergenic
ENSMUSG00000099182 UCSC
SetP1 chr1:182986472-182988053 - Intragenic
Intragenic
ENSMUSG00000102478 UCSC
SetP11 chr7:29497655-29499296 - Intergenic
ENSMUSG00000109565 UCSC
SetP13 chr9:81559591-81560730 + Intergenic
ENSMUSG00000079225 UCSC

Expression

Transcript Sequences

>NM_001204875.1
tggtggtggaggaggtggaggaggaggaggaggcggctcAGGGCAATCCAGAAGCGAGCCGGAGCGCGGGGCGCGAGTCGAGGAGCCCAGCCGAGCCGCCGCCGCCTCCCCGCCTTCAGCGAGAGCCCCGGCCGGGGGCTCGCCACAACGCGCCCGGGCCTGCCTCCGCGTCAGGCCCCGCGGGCAGTGCCAGGCAGCCAGGGGGAGGGCAGGCAAGTGAGCGCCGGGAGGAGGCGGCCGGAGCGAGCGGGCGCCGCGCGTGTGGCGTGAGGGGAAGCCGCTGGCCGCCCCCTTGGCCGTCCCTTCGCTCCCCCTCCCCGCTCCCCGCCCCGATCGCGGAGGGCACCATGTCTGCGCCGACGGCCAAAGCCAGTAAAAAGGAGCTCAACTCCAATCACGACGGGGCCGACGAGACCTCAGAAAAAGAACAGCAAGAAGCAATTGAACATATTGATGAAGTACAAAATGAAATAGACAGACTTAATGAACAAGCCAGTGAGGAAATTTTGAAAGTagaacaaaaatataacaaaCTCCGCCAACCATTTTTTCAGAAGAGGTCAGAATTGATCGCCAAAATCCCAAATTTTTGGGTAACAACATTTGTCAACCATCCACAAGTGTCTGCACTGCTtggggaggaggacgaggaggctCTGCATTATTTGACCAGAGTTGAAGTGACAGAATTTGAAGACATTAAATCAGGTTACAGAATAGATTTTTATTTTGATGAAAATCCTTACTTTGAAAATAAAGTTCTCTCCAAAGAATTTCATCTGAACGAGAGTGGTGACCCGTCTTCAAAGTCCACCGAAATCAAATGGAAATCTGGAAAGGATTTGACAAAACGCTCAAGTCAAACGCAAAATAAGGCCAGCAGGAAGAGGCAGCAcgaagagccagagagcttctttaCCTGGTTTACTGACCATTCTGACGCAGGTGCTGATGAGTTAGGAGAGGTCATCAAAGATGACATCTGGCCAAATCCCTTGCAGTACTACCTGGTTCCCGACATGGATGatgaagaaggagaggcagaagatgatgatgacgacgacgaagaggaggaggggctggAAGATATTGATGAAGAAGGAGATGAGGATGAAGGTGAAGAAGATGACGATGAGgatgaaggggaggaaggagagGAGGACGAAGGCGAGGATGATTAGCACAGAAGACTGATGGATTCcaaccttcttttttattttctttttattttttaattttctccagtccctgggagcaagTTGCAGTCCTTTCCTCCCTGTCCCTCTGTGCTCAGTCGCCCTGTTTTGAGGTCTCAACATCATGGTTCTCAATTAATTTGGGGGGAAGTATCTTGAGCAAAATACAACAGGAAAAGAATCTCCGTTTCTgttcttaattcattttttatccTTTCTTGTCTAAATTTGTGGATTCCACACCACCATGCTctgtgggaaaaaagaaaagccctCCAGTTCCCTTGGCTCTGCTGGAGGGCGCTAGGCCCCTGTGTAGTAGTTTATAGAATTttagcttttcttcttttctctgtatATTGGGCTCAGAGATTACACTGTGTCTCTATGTGAATACAGACAGTTAGCATTTACCAACATGTATCTGTCTACTTTCTCttgtttaataaaaagaaaaaaaaaaagaaaaaaagggggggtataGACGGTGAGCAAGGGTGGGTTTGAGGTGTCTGGGGTAGGTGGGCATCTGACAACATGGCTTCTCCTTTGGCATGTTTAATTGTGTGGTTTAACAGACATCCTTGCAATTTAAGGtgacacttaaaataaaattctctccTGATGATGACTTGAGCCCTGACACTCAATGGGAGAATCAGCAGAACCtgtatggttttatttggagttgacattctgttgtaattttaatttttttctttttctttttcttttttttttttttttttttggttttcactgGAAGGAAAAAGATGCTCATTTTAAATGTTGAAGTGTACAAGTTGCTTTGTTACAATAAAATCAGTGTGTACACAAAGGACCTGATGCTTTTCTGTCAACAGATGCTCAACAGACCTTCCAAGTTTGACTGCATAATGACATCACGTCAAACTTTGTCTCCCCAACTTCGTATTTTTTGATACGCACTTTGCAGGATGACCTCAGGGCTGTGCAGATTGAGAAAGGGATTTGAATCATGTCTTAACGTCTCCGTACTGAGTTGTGGGCACAGCTTGCTGCTGTGGACTTATACCCTTGATTTTTATctcaatttggcattttctttttaaaatgggcCTTTACCCGGACCTCACGGCAGCACCTACCTGCTCCCACCGTTACTGACCCGTTGCTCTGTGCCATCTATGAGGGACAGCCGCTGACGTGTCCTCATTGGCAGTGTGAACTGTCAGGGTCAGCAGTCAGTGAGGTGGTTGGTAGTGTCTGTCACAGGTATGTAGCAGAAGCTCTCAGATGTGAGACTGACGTAGGTGGATGAAGAGCTGTCTGCTCAGCGCCATCGGGCAGAGGATAATGTTTGGGAAGCTACCTGATGCGTAAGCTTTTTAATGCTGTAAAATAGAGCTAAAATTCAATGCCACTTTTTCAGAGATGATTAATGGACAGCCTGGTCAAATTCAAAGCTTTCTGATGTATAAAACTTTATAAATGGAACTACTCCATCAATAGGCAAAGTGTAACCAAAATCTGTCTAGATGGATAGTGTGTAATTTCTGCACAGGACTCTGTTTAGTAAATACATCACTGTATACGTCAGGAATCTTGCTCCAATAAAGGaacataaagattttttttgga
>NM_023871.4
GGAGAAGGGGCGTGGGGGTGTGTGTCCCACTGTCATGTAAATATCCCCCGCGGGCAGGGCGGCTGCGAGGCCGACTTAAATCTCCCGCACCTGAGGCCGCCTCAGTTCCTGTGAGTTTCTTCCTGCTGTGAACATCAGGGCTCTGGGCTCTGTCTCCCGGTCATCTCCCTCGCGCCATGGCCCCGAAGCGGCAGTCTGCGATCCTGCCTCAGCCCAAGAAACCCAGACCGGCTGCTGCCCCGAAGCTGGAGGACAAGTCGGCCTCTCCCGGCCTGCCGAAGGGAGAAAAAGAACAGCAAGAAGCAATTGAACATATTGATGAAGTACAAAATGAAATAGACAGACTTAATGAACAAGCCAGTGAGGAAATTTTGAAAGTagaacaaaaatataacaaaCTCCGCCAACCATTTTTTCAGAAGAGGTCAGAATTGATCGCCAAAATCCCAAATTTTTGGGTAACAACATTTGTCAACCATCCACAAGTGTCTGCACTGCTtggggaggaggacgaggaggctCTGCATTATTTGACCAGAGTTGAAGTGACAGAATTTGAAGACATTAAATCAGGTTACAGAATAGATTTTTATTTTGATGAAAATCCTTACTTTGAAAATAAAGTTCTCTCCAAAGAATTTCATCTGAACGAGAGTGGTGACCCGTCTTCAAAGTCCACCGAAATCAAATGGAAATCTGGAAAGGATTTGACAAAACGCTCAAGTCAAACGCAAAATAAGGCCAGCAGGAAGAGGCAGCAcgaagagccagagagcttctttaCCTGGTTTACTGACCATTCTGACGCAGGTGCTGATGAGTTAGGAGAGGTCATCAAAGATGACATCTGGCCAAATCCCTTGCAGTACTACCTGGTTCCCGACATGGATGatgaagaaggagaggcagaagatgatgatgacgacgacgaagaggaggaggggctggAAGATATTGATGAAGAAGGAGATGAGGATGAAGGTGAAGAAGATGACGATGAGgatgaaggggaggaaggagagGAGGACGAAGGCGAGGATGATTAGCACAGAAGACTGATGGATTCcaaccttcttttttattttctttttattttttaattttctccagtccctgggagcaagTTGCAGTCCTTTCCTCCCTGTCCCTCTGTGCTCAGTCGCCCTGTTTTGAGGTCTCAACATCATGGTTCTCAATTAATTTGGGGGGAAGTATCTTGAGCAAAATACAACAGGAAAAGAATCTCCGTTTCTgttcttaattcattttttatccTTTCTTGTCTAAATTTGTGGATTCCACACCACCATGCTctgtgggaaaaaagaaaagccctCCAGTTCCCTTGGCTCTGCTGGAGGGCGCTAGGCCCCTGTGTAGTAGTTTATAGAATTttagcttttcttcttttctctgtatATTGGGCTCAGAGATTACACTGTGTCTCTATGTGAATACAGACAGTTAGCATTTACCAACATGTATCTGTCTACTTTCTCttgtttaataaaaagaaaaaaaaaaagaaaaaaagggggggtataGACGGTGAGCAAGGGTGGGTTTGAGGTGTCTGGGGTAGGTGGGCATCTGACAACATGGCTTCTCCTTTGGCATGTTTAATTGTGTGGTTTAACAGACATCCTTGCAATTTAAGGtgacacttaaaataaaattctctccTGATGATGACTTGAGCCCTGACACTCAATGGGAGAATCAGCAGAACCtgtatggttttatttggagttgacattctgttgtaattttaatttttttctttttctttttcttttttttttttttttttttggttttcactgGAAGGAAAAAGATGCTCATTTTAAATGTTGAAGTGTACAAGTTGCTTTGTTACAATAAAATCAGTGTGTACACAAAGGACCTGATGCTTTTCTGTCAACAGATGCTCAACAGACCTTCCAAGTTTGACTGCATAATGACATCACGTCAAACTTTGTCTCCCCAACTTCGTATTTTTTGATACGCACTTTGCAGGATGACCTCAGGGCTGTGCAGATTGAGAAAGGGATTTGAATCATGTCTTAACGTCTCCGTACTGAGTTGTGGGCACAGCTTGCTGCTGTGGACTTATACCCTTGATTTTTATctcaatttggcattttctttttaaaatgggcCTTTACCCGGACCTCACGGCAGCACCTACCTGCTCCCACCGTTACTGACCCGTTGCTCTGTGCCATCTATGAGGGACAGCCGCTGACGTGTCCTCATTGGCAGTGTGAACTGTCAGGGTCAGCAGTCAGTGAGGTGGTTGGTAGTGTCTGTCACAGGTATGTAGCAGAAGCTCTCAGATGTGAGACTGACGTAGGTGGATGAAGAGCTGTCTGCTCAGCGCCATCGGGCAGAGGATAATGTTTGGGAAGCTACCTGATGCGTAAGCTTTTTAATGCTGTAAAATAGAGCTAAAATTCAATGCCACTTTTTCAGAGATGATTAATGGACAGCCTGGTCAAATTCAAAGCTTTCTGATGTATAAAACTTTATAAATGGAACTACTCCATCAATAGGCAAAGTGTAACCAAAATCTGTCTAGATGGATAGTGTGTAATTTCTGCACAGGACTCTGTTTAGTAAATACATCACTGTATACGTCAGGAATCTTGCTCCAATAAAGGaacataaagattttttttgga