Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Sinhcaf
Plot displaying the genomic locations of a parental gene (in chr6) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name SIN3-HDAC complex associated factor
Also known as Fam60a|Ppcs1|Pptcs1|Tera
Coordinate chr6:148822555-148847968
Strand -
Gene summary Involved in negative regulation of cell differentiation and positive regulation of cell population proliferation. Predicted to be located in nucleus. Predicted to be part of Sin3 complex. Is expressed in 2-cell stage embryo and 4-cell stage embryo. Orthologous to human SINHCAF (SIN3-HDAC complex associated factor). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Sinhcaf

Retroname Coord Strand Genomic Region ENSG
SinhcafP2 chr13:107414385-107416868 - Intergenic
ENSMUSG00000114475 UCSC
SinhcafP3 chr14:119515695-119518301 + Intragenic
ENSMUSG00000115684 UCSC
SinhcafP4 chr16:61197432-61200093 + Intergenic
ENSMUSG00000092029 UCSC
SinhcafP1 chr9:38848774-38851408 - Intergenic
ENSMUSG00000110964 UCSC
SinhcafP5 chr17:22233944-22237564 + Intergenic
N/A UCSC

Expression

Transcript Sequences

>NM_019643.4
AATTTGGTCCCGGGAGCCGCGCCTGCGCAGAGGGAAAGCGGAATCTATACCTCCGTTCGCGGTAGCAACTGAAGAACTGCTGGAGACAATCTTTCTGGACTCGGCGCTGGCGGAGGGAGTGCTTGCAGGAGGTTGGCCTGGTGCAGTTTGCACCGTGGGGACGCTGCTGCGCGTGGAAGCTTTGAACCAGAAGAAAAGATGTTTGGTTTTCACAAGCCAAAGATGTACCGAAGTATAGAGGGCTGCTGTATATGCAGAGCCAAGTCCTCCAGCTCCCGGTTCACGGACAGTAAACGTTACGAAAAGGACTTCCAGAGCTGTTTTGGGTTGCATGAGACTCGCTCAGGAGACATCTGTAATGCCTGTGTGCTGCTTGTGAAAAGATGGAAGAAGTTGCCGGCAGGATCAAAAAAAAACTGGAATCACGTGGTAGATGCAAGAGCAGGCCCTAGTCTAAAGACAACATTGAAACCAAAGAAAGTGAAAACTCTATCTGGAAACAGGATGAAAAGCAACCAGATCAGCAAACTGCAGAAGGAATTTAAACGCCACAactCTGATGCTCACAGTACCACCTCAAGTGCCTCTCCAGCCCAGTCTCCATGCTACAGTAACCAGTCAGATGAGGGCTCAGATACAGAGATGGCTTCCAGCTCTAATAGAACTCCGGTTTTTTCCTTCTTAGATCTTACCTACTGGAAAAGacAGAAAATATGTTGTGGGATCATCTATAAAGGCCGTTTTGGGGAAGTCCTCATCGACACTCATCTCTTCAAGCCTTGCTGCAGCAGTAAGAAAGCAGCTGCCGAGAAGCCCGAGGAGCAGGGGCCGGCACCTCTGCCCATCTCCACTCAGGAGTGGTGACTGAGGTTCATTTAGAAGGGAGCAAAGAGCGTTTTAAACTTTGAAAAGACCACAAAACAAACTGACCCTCCTATTTTTAACTTGGATACCTGCTATTCTGCCAAAAGACATTTTCTAGAATAGTTTTTAATGGGTTACTGTCCTTACCCTTCATCCAACAAACTCTGAAGCCAGTCTCTAGCTTACTGCAAGAAAAAGAAGTGTACATAATATTTAAGATGCTGAGTATTTCATAGGAAAGCTGAATGCTGCTGTAAAGTGctctttaagtctttttttttttttttttttaaatcccctcTAATGAATGGAATTAGGGGAATTTCAGGGGACAGAGATGGGATTTGTTGTGTGATAAACCATATGTAGTTTAGTCTTTCTGTGGAGAGGCAGTGGTTGGGGCATTTTTAAATGGCTGGCTACACTTGTTTTCCCTCATGATAATTTGTCATAACTCAGTAGCATGACCTGCCCCTAGAAGGTAGTTAAAATTTGTAAATGCTAAGGCGTTGCCAGGTCCTAATGAGTCAGACCTGTACTACTGATTATTAAGCAGGACAGACTGAGCTTTCTGCAAATAGCTTGAAGGAGGAAACAATTTCTGAACACACAAGTAGCACCGTGTCGCCTCCCTTTATCTTCATATTGATAAAAGACTTTATGTGGATCTTGTAAAACAGAACCAGATCTCCTTCTGGGGAAGGCCTTGCCTCTAGGATGGGCAAGGTTGACTAGGGATAGTCCCAAAGCATGACCACAAAGTAGAGAGCACGTGGTTAGAAACCACTTCATCAGAAtgtgtgagtcctggggatgCATGGGGCACAGTTGATGCTGCTTGGGACACGTTTCTTAGAGGGCTTACAGTATGTAAATAATTGACATTGGTGTTAACACGACTGTCGGGGATTCACTGAAATCCACATGATTCAGTTCTAGCTCTGGATTACCTCAGTTGACCTTTGTGGAGGTTTTATCTATAGAGTAGTTCTTGCCTTGTCATAGACCTTATtagggtttggggttttgttcctTCGTTGTTTTCCTCTCACTATTTAAAGTTGACTAGAAGAGAAGAGTTGTGTGTTGAGGCTAAGTTGGTGGGTTGGGTTGGCTTCTTAACATCAAGAAACTGAATGGAGCTCCACACCTCTAGATCTCAATGATTCGGTTGGCTTCTCAGTGGAACCCAACTGAAGTTGTCTAATTGCCTCTTCTCAGAGTTCAGGAAAAACAGTAGTGCCACTTGAGACCTCGTAGAGGAGGTATACGTGGCTGCCTTAGTATTCTGTTCCTCATGATTATTTTAGAAACtggattttaaaaagtcttttagaGTTTCACAACAAGGagaagccacagtttgtggcatCCTATAGTTTTACATTGTGTATTTCTTCCTTTTAGGAAAAACCTACCTAGTACAAGCTACCACGTGCACAGACAGCCCAATGAGTGGGCCATTTCTCCACAACCCTGGTGTAATACAGAGTCCAGCCATTACCATTCTCCTGCGTTACTTtgacatgggatttttttttttttttgtacattttgGCTGCAGTATTGGTGGTAGAATATACTTTGATGGATCATCtctacttctgtatttatttatttattactagacCTCAACCACAGCCTTCTCCCCCTCCACTCTCTGCCTGTAGGATGTACTGTATGTAGTCATGCACTTTGTATTAATATATTAGAAATCTACAGATCTGTTTTGTACTTTTTATACTGTTGGATACTTATAATCAAAACTTTACTCTAGGGTATTGAATAAATTTAGtcttattagaaaaataaaa