Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Chp1
Plot displaying the genomic locations of a parental gene (in chr2) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name calcineurin-like EF hand protein 1
Also known as 1500003O03Rik|Cahp|Chp|Sid470p|p24|vac
Coordinate chr2:119378172-119417505
Strand +
Gene summary Predicted to enable several functions, including calcium ion binding activity; calcium-dependent protein binding activity; and microtubule binding activity. Predicted to be involved in several processes, including microtubule cytoskeleton organization; regulation of protein modification process; and regulation of protein transport. Predicted to act upstream of or within protein transport. Predicted to be located in several cellular components, including Golgi membrane; microtubule cytoskeleton; and transport vesicle. Is expressed in genitourinary system. Human ortholog(s) of this gene implicated in spastic ataxia. Orthologous to human CHP1 (calcineurin like EF-hand protein 1). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Chp1

Retroname Coord Strand Genomic Region ENSG
Chp1P3 chr16:32227352-32229917 + Intragenic
ENSMUSG00000103847 UCSC
Chp1P2 chr8:53227287-53230585 + Intergenic
ENSMUSG00000109983 UCSC
Chp1P4 chrX:73554453-73555424 + Intragenic
ENSMUSG00000082447 UCSC
Chp1P1 chr2:137589447-137589635 - Intergenic
N/A UCSC

Expression

Transcript Sequences

>NM_019769.3
GCGCTCCACCCCTTGTTTCTCTCCCCGGGCCGCAAGAGAAACAGTGCCCTCTCCCTTCTTGACCCCtggcccttccctccctccttcccttctgccGCTGCTGCTTCTGGCGCTGCCGCTCCCGGAGGAGCTCCCGTCACGGTGATGGGGTCTCGGGCCTCCACGTTATTGCGGGACGAAGAGCTCGAGGAGATCAAGAAGGAGACTGGCTTTTCCCACAGTCAGATCACGCGCCTGTACAGCCGCTTCACCAGCCTGGACAAAGGGGAGAACGGGACTCTCAGCCGGGAAGATTTCCAGAGGATTCCAGAACTTGCCATCAACCCACTGGGGGACCGGATCatcaatgccttcttctcagaggGAGAGGATCAGGTAAACTTCCGAGGATTCATGAGAACATTGGCTCATTTCCGACCCATTGAGGATAACGAAAAGAGCAAAGATGTGAATGGCCCGGAACCCCTCAACAGCCGGAGCAACAAGCTGCACTTTGCTTTCAGACTCTATGATTTGGATAAAGATGACAAGATCTCCCGTGATGAGCTGTTACAGGTACTGCGAATGATGGTTGGAGTGAATATCTCGGATGAGCAGCTGGGCAGTATTGCGGACAGGACCATCCAGGAGGCTGACCAAGATGGAGATAGTGCCATATCTTTTACAGAATTCGTTAAGGTTTTGGAAAAAGTGGATGTAGAACAGAAGATGAGCATCCGATTTCTTCACTAAAGGGCAGAGACCAAATTATTCTTGCTTTCTAGTATTTAAGAACTGAAACTTGTgtcctccagccccaccccatccTGTCATCCCCTTTTCCCAGAATACTACAGCTCTTGCATGACAACCTGAAGTCTCTCCTGTCCATACAAACTTGCCTTTGGTGTATAAACAGGGCGTTACAGAATGGTACCCTCTGTCTGCTTCTGTTCAGTATCCACCCACCAGGTCCTTAGTTGTCAGTACCATCTTCCCCTGTTAGCTGCTGAGTGCCATGCATCCATCCTGTCTGGGGAAATGAACCAGCCAGCAAAGCTCCCACTGGATGGGGACTATATCCATGCTGCCTTCCATCCCTGCATCGAGCCTCCACCATGTTTCTGTGACCTTGTGTCCTTTTGTCCTTGTGTCTGTTACTTCCTACCTCTCAGTCATCCAAccttctctccattcagtttttCAGCTGCCCTCCTGTCGTTGAGATTCCCTGCATTTTACTTGattctgggctctgggctctgctgTTAAGCCTGTTTCTGATGTGGCAGGATAGTTAGTGGTGTGGTGAGTTATAGCTACCTTCTAATGTGTCTCTGGGACGTTGCCTATCCAGGAGCTTTTCAGCAAGCAGTACTGCTCTTGGAAGCATGTGACTCCCTTGGTCCCCTGTATTGCTCTGTTGTCGAAGGGCTTATGAGCAGACATGTTCTTAAAAGGTGGTCATGGTGAGGCTTGTAGAGCCATGTTTCCTAGGTGGCTTCCCAGGTCTCTCTACCTCTgactttttattttcaaacatatttATGTGGCTTTTCTGGGTACAGTGTTGACATTCATTAGAAAATATTCTAATGCCTGCCAGTTTGCTTCTCTTTGGAACATTGTCACCACCCAAGTGGCTCTTCTGACAATGTGGTAGAGGGCCTTCTTGTAGTTTTCTGAACAAGGCTAGGCACCCTGGAGAGCTGGCCACATTTGCTCTACAGCATGGGTCATGCCTCAGTGTTCTGTACACTGGAAGAGTCTTCACATTTCCAAACAGAAAGACTAGTGTTACAGAAGTGCCTGACTTATCTCAGTCCTAAAGAATTAGATTGTCCTCAGTGTCTTAAAGTTTCGCACAAAACTCTGAATGAATTTTATACTTGGCAAATTTTAATGCTGGACGATGTGCAGTCAGTTCATAGTCCTGGTCCAGGCCTTTAGTGTATTGTCTCATGAGCCTCCTGATGGCGTGACCTTCCTAGCTCCCTGTGTATACTACGCAGATCCCATAGAAGCATGGGGCCAAGGATTGGTGGCACCAACTGAGGTGACATTTAGAGGTCTTTGAGTGACCCAGCTCAACTTCTCTGCCAATGTCAGCTTGATTTAGATCTCACTGAATCAGGCTGCTTCTGTCCTGTGTCCCTGTGAATCTGCTCTTGGCTGGCTTTCTCTGATGtcgcttccttgcttgcttgcttcgtTGCTTTGGAAGGCTATCCAAGGTGTGTAAACAATTCTTTAGTAAATAAATTGCTattaacccaaacaaacaaaaacactgcaAAGAGGATGGGTAAAGGTGAGCAACAGGGGAATGGCTGGGATAGATGGCTGGGGCTACATGAACTGGGGATTCTTTACGAAATATCTGTTAGACTTTGTGATCAAATGATGTGATAAAAGAATTGTATAAAGGGAATAATTGTCTGATACTGATCTGTTTGAGAAGTATTGAGAAGCTtctcaatttaaatatttaaactttCTAAGCTTATGCCCCCTTGGCTGTGTATAGCAAACTGTTTTTATCCACAGTTGTGCCTTATTGTCCCATTAAAGTTGTATTCCTCAATTCATCAATAAATCAATTGTTGTTAAAACAAAA