Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Litaf
Plot displaying the genomic locations of a parental gene (in chr16) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name LPS-induced TN factor
Also known as 3222402J11Rik|N4WBP3|TBX1
Coordinate chr16:10777137-10810985
Strand -
Gene summary Predicted to enable several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; WW domain binding activity; and zinc ion binding activity. Acts upstream of or within cellular response to lipopolysaccharide; negative regulation of NIK/NF-kappaB signaling; and regulation of cytokine production. Predicted to be located in several cellular components, including cytoplasmic side of endosome membrane; cytoplasmic side of lysosomal membrane; and cytoplasmic side of plasma membrane. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; retina nuclear layer; and vibrissa. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 1C. Orthologous to human LITAF (lipopolysaccharide induced TNF factor). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Litaf

Retroname Coord Strand Genomic Region ENSG
LitafP1 chr10:33288019-33288431 + Intragenic
 ENSMUSG00000112521 UCSC

Expression

Transcript Sequences

>NM_019980.2
TGCCTCCCCGGAGCCCTCCCGGCCCGCGCGCGCGGCCAGAGCAGACCTCCCGGCTCGACTGGCGGCGCGGGCAGCGgtAAAATGTCGGCTCCAGGACCTTACCAAGCAGCTGCAGGCCCTTCAGTAGTGCCCACCGCACCCCCAACCTATGAAGAAACAGTGGGTGTCAACAGTTACTACCCAACGCCCCCAGCACCTATGCCGGGACCAGCCACAGGGCTCATTACAGGCCCAGATGGGAAGGGAATGAATCCACCTTCGTACTACACCCAGCCTGTGCCTGTCCCCAACGCCAACGCAATTGCCGTGCAGACCGTTTATGTGCAGCAGCCTGTCTCCTTCTATGACCGCCCCGTCCAgatgtgctgtccttcctgcaGCAAGATGATCGTGACCCAGCTGTCCTACAATGCGGGAGCCCTCACCTGGCTCTCCTGTGGCAGTCTGTGTCTGCTGGGATGCGTTGCTGGCTGCTGCTTCATCCCGTTCTGCGTAGACGCCCTACAGGATGTGGACCACTACTGCCCCAACTGCAAAGCGCTCCTGGGCACCTACAAGCGCTTGTAGGACTTGGCCAGCCCGCCACTGCAGAGGTAGTAGACAATTGCTACCAGAAGTCACCTGACCCTTGCCCAGCCAGAAGAGCTTGATGTCATCTCTTCGTGGGCTCCATCTTCGTGTCTTTTAGGGGGTGGGAAAGGTAGGAAGAGTAACAAGCCTCCAAGCCCAGAAACTGCTGCTGGAGTTGTGCCCTGCACATGCGAAGACGTGGACCTTGGGTGTTGTCTCAAGGGTTTCCTGCCTGCTCATGTTACCCCACTAACTGTGATTGTTACCCCATTTGCATCTCCTCTGCTGATTTGCCATTGGTGCCAGTCTCAAACCCCGAAGCCACGATTTGCCTTATTTTTCACTGTTTGGCTTGATCTATTCCCATCCCTGAGACAGAGCCTGCCTTAAAGACTGGTTTTGTAATGACAGACGTCTCTGGCACTCAGAATCACTTTAATTTCATAgagttgggttttttatttttgtttttttttttcccaagtgcACAGAAGGGCTGCTCACACCCACCAGACACATACAGATAAGGTCACAAGTACTAAATAAAAGGCTCACATTCCTTCCTGTCTCAGCTCCTGGCCTGTGAAGGGTCTCCTTTCTCATACAGTTTCTGGGAACTCCCTTTGTTCATAAACACAGATGAAAGTTACTTGGCAGGGAGACATTTCTAGAATAACTTTTGTAATCACGATACACCATTTCTCCATTTGCTGGTGTGTTTTTAGttggttctgttttagtttttCACATTCAGTCCAGCTTGTTGGccaggccagcctcgaactcCTAGGGGATCCTCAGTCTTCGGCTCTCAGACATGCAGGGCCCTAGCTGTGTGCCTCTACACCCACTGggccttttgttctgtttttctttgacaGAGAAACAAACAGGTAATTTCATTGCCTGCCTATGTAGGTTTGGTGTAGTTTTGAAAGCCTTGTCTCTGTGGGGTCTCTTTGAGGGAGTTGGGGGACCTCTATTTGAGCCCTGCTTCAGTGCCGAGAGATTGGGAGTGGAACTCCCTGAAACATGATTTCAGTTTTTAGAGATGACCTTCTGTGGTACGGTCATCATGGTCTCCAACATCACCAGACCAAGTAGAAGGATGTCAAAGACAAATTCAGGGCTCTTTCTAGGGTGACCACTCTGCCGTGTATAATATTGTCCCAGTCTGGCCAGCTTTCTAGGAGGCCCTGGCTCCATCCTAAGTCTACACAGGATCTGCTGCAAATAACAGTGTACGGAGTCAACCTGACCCGGAACAGAAGTCTGCATGCTGGTTAAGATGCAGCCTAGCCATTGCCTGAGCTGTTCATACAATGATCCGGAAGTGCTAGCCATTATTTTTGCAGTGAATTATGGATACCATACATGACTTTGATATCtgcttttaaacaaataaaatctttgaTCACTCAGTGAACAATCCAGTTCACCTTTTATGAAGAAAGGCCTTGTGTTGTGTTTCCAGGCATTGCCCGAAGAATCTTAAGTTGCTCTGTTACACTAGAAAATCCTTCCTGACCCACACCTCAGGCTTCAGCTGCAGCAAGATGACTGTTGCTAACGAGTTGCGTTCGAAGGTTTGGCTGTCGGGAGCCCTTAGTCGTCATCAATGGCAGCAAGCCACGGctttcaagttttaataaaatgccAAGAAGGAA