Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Rps27
Plot displaying the genomic locations of a parental gene (in chr3) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name ribosomal protein S27
Also known as 3200001M24Rik
Coordinate chr3:90119974-90120955
Strand -
Gene summary Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in rRNA processing and ribosomal small subunit assembly. Predicted to be located in cytosolic ribosome and nucleus. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in postsynaptic density. Is expressed in central nervous system; pancreas epithelium; and retina. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 17. Orthologous to human RPS27 (ribosomal protein S27). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Rps27

Retroname Coord Strand Genomic Region ENSG
Rps27P2 chr1:63112917-63113225 + Intragenic
ENSMUSG00000081429 UCSC
Rps27P1 chr1:154907447-154907686 + Intergenic
ENSMUSG00000101433 UCSC
Rps27P18 chr11:97007620-97007780 - Intergenic
ENSMUSG00000084368 UCSC
Rps27P19 chr12:28936205-28936414 - Intergenic
ENSMUSG00000113325 UCSC
Rps27P21 chr15:99604385-99604727 - Intragenic
ENSMUSG00000115938 UCSC
Rps27P22 chr17:66401909-66402147 + Intragenic
ENSMUSG00000117321 UCSC
Rps27P23 chr17:71915662-71915870 - Intergenic
ENSMUSG00000117275 UCSC
Rps27P24 chr18:24077059-24077233 + Intragenic
ENSMUSG00000117504 UCSC
Rps27P4 chr2:164484866-164485143 - Intergenic
ENSMUSG00000083740 UCSC
Rps27P5 chr3:104823168-104823512 - Intragenic
ENSMUSG00000106105 UCSC
Rps27P6 chr3:117016566-117017268 - Intergenic
ENSMUSG00000105914 UCSC
Rps27P7 chr4:135802048-135802314 - Intergenic
ENSMUSG00000082877 UCSC
Rps27P11 chr6:57593956-57594283 - Intragenic
ENSMUSG00000107627 UCSC
Rps27P12 chr6:97867188-97867533 - Intragenic
Intragenic
ENSMUSG00000083086 UCSC
Rps27P13 chr7:42138201-42138536 + Intragenic
ENSMUSG00000092505 UCSC
Rps27P14 chr8:49083965-49084237 - Intragenic
ENSMUSG00000110509 UCSC
Rps27P25 chrX:38208526-38208792 + Intergenic
ENSMUSG00000084039 UCSC
Rps27P3 chr2:119115238-119115574 + Intragenic
ENSMUSG00000084015 UCSC
Rps27P15 chr9:114811462-114811807 - Intragenic
Intragenic
ENSMUSG00000050621 UCSC
Rps27P8 chr5:108421141-108421303 - Intragenic
Intragenic
N/A UCSC
Rps27P9 chr6:120794728-120795058 + Intragenic
N/A UCSC
Rps27P10 chr6:38547609-38547812 - Intragenic
N/A UCSC
Rps27P16 chr9:66180581-66180900 + Intergenic
N/A UCSC
Rps27P17 chr11:69464652-69464994 + Intragenic
N/A UCSC
Rps27P20 chr14:26883183-26883397 - Intragenic
N/A UCSC

Expression

Transcript Sequences

>NM_027015.4
CCTTTCCGGCGGTGACGACCTCCCTACGAGAACATGCCTCTCGCAAAGGATCTCCTTCATCCCTCtccagaagaggagaagaggaaacacaagaaaaagcGCCTGGTGCAGAGCCCCAATTCCTACTTTATGGACGTGAAATGCCCAGgatGCTATAAAATCACCACGGTCTTTAGCCATGCACAAACGGTAGTCTTGTGTGTTGGCTGCTCCACTGTCCTCTGTCAGCCTACAGGTGGAAAAGCAAGGCTGACAGAAGGATGCTCCTTCAGGAGGAAGCAGCACTGAAAGCCCCTGATTGAAGATGAGTGGGAACCTTCCCAATAAACACGTTTTGGATATATAA