Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Smarce1
Plot displaying the genomic locations of a parental gene (in chr11) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
Also known as 2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27
Coordinate chr11:99099873-99121843
Strand -
Gene summary Enables RNA binding activity. Acts upstream of or within neurogenesis. Part of SWI/SNF complex; nBAF complex; and npBAF complex. Is expressed in several structures, including alimentary system; branchial arch; central nervous system; genitourinary system; and sensory organ. Human ortholog(s) of this gene implicated in familial meningioma. Orthologous to human SMARCE1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Smarce1

Retroname Coord Strand Genomic Region ENSG
Smarce1P8 chr13:65075689-65077031 - Intergenic
 ENSMUSG00000113263 UCSC
Smarce1P9 chr13:83909262-83910453 - Intergenic
 ENSMUSG00000114588 UCSC
Smarce1P2 chr2:83259049-83259205 + Intergenic
 ENSMUSG00000083389 UCSC
Smarce1P3 chr3:76791778-76792631 + Intergenic
 ENSMUSG00000102216 UCSC
Smarce1P4 chr4:16390400-16391710 - Intergenic
 ENSMUSG00000080065 UCSC
Smarce1P5 chr4:57455520-57457601 - Intragenic
 ENSMUSG00000081615 UCSC
Smarce1P6 chr5:146511642-146512982 + Intergenic
 ENSMUSG00000094090 UCSC
Smarce1P7 chr8:42110568-42111707 - Intergenic
 ENSMUSG00000094568 UCSC
Smarce1P1 chr2:14194352-14194749 - Intragenic
 N/A UCSC

Expression

Transcript Sequences

>NM_020618.4
GGCGGAGGCAGGGGAGCCCCGCTGGGCGCCAGCAAGGACCTAAACGCAGCGACCCGGGTCCTCCCCGCCTACATTCTCCATCTTCTCCATTCATACGTCCATCAGCGGAGGACTGAAGACCAGAGCGAAGGGAAAAGCCAGAGTGCATGGTGTGTGGGAACTGCGTCCCACCCTCTCCCGGGAGAGGCTCCGGCGAGCCTTTCCCCTCCGGCGCCCGCCTCACGCGGCGGCGCCCACCGCCTCAGTGAAGCCCCGGGCGCGCAGTCTGCGCAGTTCCTGCCGCCGGGCCGCGAACCAGGGCCCGCAACGCGGCCCAGCCTTCTCCGCCCTCCTCGCCGTGACGAATCGGCGCCCGACTGGGACGGGATCCAAATTGGAAGACTTCTGAGGAAACCCAGGAGCCTGacgaaattttttttaaaaatccttggcGCCCTAAGCCTCGCCGCGTGCTCACTGGAAGGGCTGTTCGTCTGCCGGGAGCCGGCCGCGGCCGGCAGACAATTCCCGGGAGCGTGTGGAAAGTGCGAGCGCGGAAGCTCCGGCGCGAGGGGCGGGGCGAGCGCGGGACAAAGGGAAGCGAAGCCGGAGCTGCGGGCGCCTGCTCGGCCCGCGGtgtctCAGATTCATTCTTAAGGAACTGAGAACTTAATCTTCCAAAATGTCAAaAAGACCATCTTatgccccacctcccaccccagctcCTGCAACACAAATGCCCAGCACACCAGGGTTTGTGGGATACAATCCATACAGTCATCTCGCCTACAACAACTACAGGCTGGGAGGGAACCCGGGCACCAACAGCCGGGTCACGGCGTCCTCTGGCATTACGATTCCAAAGCCTCCAAAGCCACCAGATAAGCCGCTGATGCCCTAcatgaggtacagcagaaagGTCTGGGACCAAGTAAAGGCTTCCAACCCTGACCTAAAGTTGTGGGAGATTGGCAAGATTATTGGTGGCATGTGGCGAGATCTCACTGATGAAGAGAAGCAAGAATATTTAAACGAATACGAAGCAGAAAAGATAGAGTACAATGAGTCTATGAAGGCCTACCATAATTCCCCTGCGTACCTTGCCTATATTAATGCAAAAAGTCGTGCGGAAGCTGCATTAGAGGAAGAAAGTCGACAGAGACAGTCTCGCATGGAGAAAGGAGAACCTTACATGAGCATTCAGCCTGCTGAGGATCCAGACGACTATGATGATGGCTTTTCAATGAAGCACACAGCCACTGCCCGTTTCCAGAGAAACCACCGTCTCATCAGTGAGATCCTCAGTGAGAGTGTGGTACCTGATGTGCGGTCGGTTGTCACAACAGCTAGAATGCAGGTCCTCAAGCGACAGGTCCAGTCTTTAATGGTTCATCAGCGGAAACTAGAAGCCGAGCTCCTTCAGATAGAGGAACGACaccaggaaaagaagaggaaattcCTGGAAAGCACGGACTCCTTTAACAATGAACTTAAAAGGTTATGTGGTCTGAAGGTGGAAGTAGACATGGAGAAGATTGCGGCTGAGATCGCACAGGCGGAGGAACAAGCCCGCAAGAggcaagaggagagggagaaggaggcagcAGAGCAGGCTGAGCGCAGTCAGAGCAGCATGGCCCCTGAGGAAGAGCAAGTGGCGAACAAAGCCgaggagaagaaagatgaggagagCATCCCGATGGAGACAGAGGAGACACACCTTGAAGACACAGCAGAGAGCCAGCAGAATGGTGAAGAAGGCACGTCTACTCCTGAGGACAAGGAGAGTGGGCAGGAGGGGGTTGACAGCATGGAGGTGGAAGGGACCAGTGACAGTAACACGGGCTCAGAGAGCAACAGCGCCACAGTGGAGGAGCCGCCCACAGACCCAGTGCCAGAAGACGAGAAGAAGGAGTAAATGTTGCCTTGTTTTATGTGACCtaaaacttttttaaatgaaaaaaaaatgtggttttttttttggttttaatggTGTTATGTGGTCTGTGTATTAATTATTTACTTTTCCGTTGATACAACATGAAGGTCTTTGAACCCTCAGCATCATAGCCTAATGCCAGCCGCTCACCTTTCTTAGCTCTCAACGTCTGAAACCTCAGAGCTGAGATTAATCAAGACACCCATCATTCTCTGAGAACTACCTTGGCTGCTGCAGAATCGACTCTTCCAAATACCTGCCTTCAGCTCACGTGGTGCTCACCAAAGCCATAGCTTTAAACCCTTCCAGCCCATCCACAGCTTTCCCAGTCCCTGTCTTGTGTACTTACACAGAGTGCCCTCTTGAAATCATGAGGGGGTCTCTTCACTCACCCTTTCTATGTCCCATGTCAGACACCAGGAGTTCTCTTACAGGGTAGGGTGTAGCCAGAAACTGGTGAGACACAGATCACAGAGATGCCTCTGggggcactgggggtgggggagcagggggagtaCAGTTGTTCTTTCTGTGGATTCCTTGTTGGTGAGAGCTGCGCCTGCTTATCTAGAGTGCTGTTCAGTGTAGTCGATCTGGGATGTGTTCTGGGAAATTCATCCTTTTTGTACAGGGGaaagaaacacttttttttacCAGATTGGCTTTCCAAAGACACGATAGATGGCAGAGCTTAAGGAATGGAATGTTCTTATAATGGACTACAGACTTCAAAGTGATTGGCccattccaaaaggaaaatgggaATGCTGTTCATCCATGTGAGCATACTTCACAGTGATGAAAACCTCAAGACTCGAGATCCCATAGATCAGAGCCGAACCTACTTTTTTGATAACCCCTGTAGTGGTCTTAGAGACTAGAAACAAGATAGTTTGTAGTGTGTGCTCCCTAAAATCTAGAATAGATTTTTACTGAATAGTGGTATATATGATGGTATATGTTTCTTAAAGGTCCAAacataataaagaaattaagacaaA