Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name ALS2
Plot displaying the genomic locations of a parental gene (in chr2) and its retrocopy(ies). Each line represents a retrocopy.
Specie Homo sapiens
Full Name alsin Rho guanine nucleotide exchange factor ALS2
Also known as ALS2CR6|ALSJ|IAHSP|PLSJ
Coordinate chr2:201700267-201781153
Strand -
Gene summary The protein encoded by this gene contains an ATS1/RCC1-like domain, a RhoGEF domain, and a vacuolar protein sorting 9 (VPS9) domain, all of which are guanine-nucleotide exchange factors that activate members of the Ras superfamily of GTPases. The protein functions as a guanine nucleotide exchange factor for the small GTPase RAB5. The protein localizes with RAB5 on early endosomal compartments, and functions as a modulator for endosomal dynamics. Mutations in this gene result in several forms of juvenile lateral sclerosis and infantile-onset ascending spastic paralysis. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2008]

Retrocopy(s) from ALS2

Retroname Coord Strand Genomic Region ENSG
ALS2P1 chr18:28824652-28824862 - Intergenic
ENSG00000271238 UCSC

Expression

Transcript Sequences

>NM_001135745.2
ACTGGGTTGCCAAGCTCGCGCCGGATGCGGAGCGCGGTGCTGCCGGTGGAGCTTCAGGTCTTGATAGACTTTCTGTAAAGAAGGAATGATTTGGTGATGGAGTGTTCCCACTGACCGATGGACTCAAAGAAGAGAAGCTCAACAGAGGCAGAAGGATCCAAGGAAAGAGGCCTGGTCCATATCTGGCAGGCAGGATCCTTTCCCATAACACCAGAGAGATTGCCAGGCTGGGGAGGAAAGACTGTTTTGCAGGCAGCCCTCGGAGTGAAACATGGAGTTCTTCTGACTGAAGATGGTGAGGTCTACAGCTTTGGGACTCTTCCCTGGAGAAGTGGACCAGTGGAGATTTGTCCAAGTAGCCCCATTCTAGAAAATGCCCTGGTTGGGCAATATGTTATTACTGTGGCAACAGGAAGCTTCCATAGTGGAGCAGTGACAGACAATGGTGTCGCGTACATGTGGGGAGAGAATTCTGCTGGCCAGTGTGCAGTAGCCAACCAGCAGTATGTGCCGGAACCAAATCCTGTCAGCATTGCTGATTCTGAGGCCAGCCCTTTGTTAGCAGTCAGGATTTTACAGTTGGCGTGTGGCGAGGAGCACACTCTGGCATTGTCAATAAGCAGAGAGATTTGGGCATGGGGTACCGGTTGTCAGTTGGGTCTCATTACCACTGCCTTCCCAGTGACAAAGCCGCAAAAGGTAGAACATCTTGCTGGGCGAGTGGTGCTTCAAGTTGCCTGTGGTGCTTTCCACAGCTTAGCCCTTGTACAATGCCTCCCTTCCCAGGATCTGAAGCCAGTCCCAGAACGATGCAACCAGTGCAGCCAGCTCTTGATTACTATGACTGACAAAGAAGACCATGTGATTATATCAGACAGTCATTGTTGCCCATTAGGTGTGACACTGACAGAATCTCAGGCAGAAAACCATGCCAGCACTGCTCTCAGCCCCTCCACTGAAACCCTTGACAGGCAGGAAGAAGTATTTGAGAACACTCTTGTAGCAAATGATCAGTCTGTTGCTACTGAACTGAATGCAGTAAGTGCTCAGATCACAAGCAGCGATGCCATGTCCTCTCAACAAAATGTCATGGGAACAACTGAAATTTCCTCTGCCAGAAACATACCATCATACCCTGACACCCAAGCAGTCAATGAATACCTACGGAAACTGTCAGATCATTCAGTAAGAGAGGACTCAGAGCATGGTGAAAAGCCAGTGCCATCTCAGGTACCTGCTCAATTTTATAAAATAAAAGTGTGTCTAGAGTTGAACTGTATGGGCTTTTCTTTAGAAACTTTAAAATGAGTAAGGCTTGGTAGCATTTTTTATTTTTTGAGTTTGATTATAATTTTGTTTTATCAGGCAAGCCTAGATAAAGGAAAGAACCTGGATTAATTCAAAATCACTCTTTATGTTTGTTCTGGCCCTTTATGATATTGAAAGGTGTCATGTTGGGCTTGTTTTATAAGTAGGAGCATTTCATTTTTTTTTCTTGCTAGTACTTTTTTTCTATGGCTAAAGTACTGAATTTTGGTGGGCCCTGAATAGTTTAATATAACTAGAGATTCACAAAGATTCTTCTTACTTGTGTTTGTAACACTCTTCAGAATTCTGTAGAGAAAAGTCTTTTCCTTCTTTAACAGGGAAGATTGTTTTGTGGCAGATCCTTCAATTGTAGGCAGATTTAAAACTTACAGGCAATTACATGTTTCAGTTTTTTTCAATTATAGCTGTGGTCCTTACTGGGCTTAATTTGAAGAGGTGGCTAATAttttatctttttgtttgtttgtttttgagatggggtcttgctctgtcacccaggctggagtgcagtaatgcgattgtggctcactgcagcctcgatctcccaggttcaagcgatcctcccatttcagccttccaagtagctgggactatacacatgccaccacacctgctgattttatttttaagtagagtagagcctgttgcccaggctcatctcaaactcctgagctcaagcaatcctcccacctcagcctcccaaagtgttgagattacaggcatgagccatcatgcccagccTATTTTATATATCTTATTAAAACTATTTTCATTTTGAAGATTTGTGGTAGAATGAACAAAAGTTGTTTATCAGTAGCACATGGTAAAGTTTGAGTTCCCGCTTAAACTAAATTGTTTTAAAAGGATTATTTCTGTGTTTTACTCTTAGTGTGGCCTTTTGATTTTGCTTTACCAAAACTGTAAGAAAACAAAACAAAAGATCATACTCATAAAAGATCTGTCCTGCAGTGTTTCTTTTTAGGTTTTTGAAACCACATAGCCTCTTGATTCTCAATTCTTATTGTTTACTCTGTCAGAATGTGAACATGAAGGTATTTTTAGAAATAGTCTTTATTTCACAATCTATTCACTGAAACTTGTGGGTATTTGAATTTTTAAAAAAATCAAGGATAAGCTGTTTGGAGAAAGGTATTATAAAGTCTGAACAAAGCAAAAGTAGTAGTTTAACAAGAATGCATGTAGAAAATTCTTAGACTGTACATGCTTATCACATTTTACTTACTTTGTTAAACATTGGAAGTTTTTGTTACTTATGCTAGTAACAATGTGTGTGTTTCTattgaattaaatttaatttatttaaattaaa