Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name SELENOK
Plot displaying the genomic locations of a parental gene (in chr3) and its retrocopy(ies). Each line represents a retrocopy.
Specie Homo sapiens
Full Name selenoprotein K
Also known as HSPC030|HSPC297|SELK
Coordinate chr3:53884417-53891859
Strand -
Gene summary The protein encoded by this gene belongs to the selenoprotein K family. It is a transmembrane protein that is localized in the endoplasmic reticulum (ER), and is involved in ER-associated degradation (ERAD) of misfolded, glycosylated proteins. It also has a role in the protection of cells from ER stress-induced apoptosis. Knockout studies in mice show the importance of this gene in promoting Ca(2+) flux in immune cells and mounting effective immune response. This protein is a selenoprotein, containing the rare amino acid selenocysteine (Sec). Sec is encoded by the UGA codon, which normally signals translation termination. The 3' UTRs of selenoprotein mRNAs contain a conserved stem-loop structure, designated the Sec insertion sequence (SECIS) element, that is necessary for the recognition of UGA as a Sec codon, rather than as a stop signal. Pseudogenes of this locus have been identified on chromosomes 6 and 19.[provided by RefSeq, Aug 2017]

Retrocopy(s) from SELENOK

Retroname Coord Strand Genomic Region ENSG
SELENOKP5 chr19:10266619-10266915 - Intergenic
N/A UCSC
SELENOKP1 chr19:37693030-37693591 - Intergenic
ENSG00000267319 UCSC
SELENOKP3 chr6:118782821-118783440 + Intergenic
ENSG00000225549 UCSC
SELENOKP2 chr6:131819307-131820117 - Intragenic
ENSG00000219532 UCSC
SELENOKP4 chr7:84847825-84848156 - Intergenic
ENSG00000235243 UCSC

Expression

Transcript Sequences

>NM_021237.5
GAGCAGAGGGAGATACAGAAACCGACAGGGGCCAGGCGCCCGGTGGCTCCGAAGCGGGGAAGTGGGACAAGATGGTTTACATCTCGAACGGACAAGTGTTGGACAGCCGGAGTCAGTCTCCATGGAGATTATCTTTGATAACAGATTTCTTCTGGGGAATAGCTGAGTTTGTGGTTTTGTTTTTCAAAACTCTGCTTCAGCAAGATGTGAAAAAAAGAAGAAGCTATGGAAACTCATCTGATTCCAGATATGATGATGGAAGAGGGCCACCAGGAAACCCTCCCCGAAGAATGGGTAGAATCAATCATCTGCGTGGCCCTAGTCCCCCTCCAATGGCTGGTGGATGAGGAAGGTAAATGTCTGCTCTAAGAAGCAGACAACCGGACATGCGCATTCATAGCAGAAGGAAACCATCAAGAAGTGGAAGGCTGACCATGATGAGCAGTAGATGAATGTGTATGTCTAAACAAGGACTGCTCTGTGTCCTCACAGATGAATGAGGTCATGCTGGGAATTCCCTCTGCAGGGAACTGGCCTGACTGACATGCAGTTCCATAAATGCAGATGTTTGTCTCATTACCTTTTTGTATAGTTTATTAAAGTATTAATATAGTTTTAATAAGTAAATATTTTTAGGTTGCAGAATGGACTCCTCATCTTTATATTCACGAAAAAGCAATCTGAAGAAAACAAATAAAAGCCTGTGTATTTAGCACTGTTAGTGTCACCTTTTCAACTTCTGAAACACTGTTCATTGTTAACTTTTTCTCATTTATAAATCACTGTATTTATTTTAGTAGTATGCATAGCATATCTGTGCTCTTGAATTAATTTTTATCTTTAACATATTTGTCTCATCAATCTTTAATACACTGTGTCTAATTTGCTACCAAATGTAATTATCAGGGTATTTATAAAACCATAGCTAACAAAACTGAGCTACAAAATGAAAATTTACTAAATAGTTTTTAAAATCATGGACTTCAgcctggcgcggtggctcatgcctgtaatcccagcactgtgggaggctgaggcgggcagatcgcctaagttcacgagtttgagaccagcctgcagcatgacgaaacctaaaataacaaaaattagccaggcgtggtagagtgcacctgtaatccctgctactcaggaggcggaggcaggagaatcgcttcaacccgggaggcggaggttgctgtgagcatgccactgcactcctgcctaggcaacagagtgagaccctgtctcaaaaaaataaataaaaCCATGGGCTTCCATGCTATCTTGACAAATTTGCACTCTATAGCATCACTCAAAATACTGCCTATtggctttaaactccatctgaatactgataactttcacattctttcactagagtggaagctctgagactaggaattttgttgtctttaccccagtcctttgaatagtgactacatgtaagatagtcatgtagtatttattggaaataaatATTTATTGGAAAAACGAAAA