Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Phgdh
Plot displaying the genomic locations of a parental gene (in chr2) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name phosphoglycerate dehydrogenase
Also known as -
Coordinate chr2:200484245-200513564
Strand -
Gene summary Enables phosphoglycerate dehydrogenase activity. Predicted to be involved in serine family amino acid biosynthetic process. Predicted to act upstream of or within several processes, including G1 to G0 transition; cellular amino acid metabolic process; and nervous system development. Human ortholog(s) of this gene implicated in Neu-Laxova syndrome 1; PHGDH deficiency; and amino acid metabolic disorder. Orthologous to human PHGDH (phosphoglycerate dehydrogenase). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Phgdh

Retroname Coord Strand Genomic Region ENSG
PhgdhP5 chr6:69937896-69938155 + Intergenic
 N/A UCSC
PhgdhP8 chr17:69014430-69014937 + Intergenic
 N/A UCSC
PhgdhP1 chr1:79677713-79679420 + Intergenic
 N/A UCSC
PhgdhP2 chr2:124761716-124763446 - Intergenic
 N/A UCSC
PhgdhP3 chr2:126190915-126192590 - Intergenic
 N/A UCSC
PhgdhP4 chr6:45345737-45347298 - Intergenic
 N/A UCSC
PhgdhP6 chr15:73179328-73181041 - Intergenic
 N/A UCSC
PhgdhP7 chr17:28184538-28186087 - Intragenic
 N/A UCSC

Expression

Transcript Sequences

>NM_031620.1
AGTCAGCGTAAATTGTGCGTGTTAAAGCTCACCAGGTACAGGCCTTCAGTTTCCTGTACTAAGTGCTTCTGCCCACCAGAGCAACCGATTCTAAGGCCTGGCTCTAGCAATGGCCTTCGCAAATCTGCGCAAAATACTCATCAGTGATAGCCTCGACCCCTGCTGCCGGAAGATCCTGCAAGATGGAGGGCTGCAGGTGGTGGAGAAGCAGAACTTGAGCAAGGAGGAGCTGATAGCCGAACTCCAGGACTGTGAAGGCCTTATCGTCCGGTCAGCTACTAAGGTCACTGCTGATGTCATCAATGCAGCAGAGAAGCTCCAGGTGGTGGGCAGGGCTGGTACAGGCGTGGACAATGTGGATCTGGAGGCTGCCACAAGGAAGGGCGTCCTCGTCATGAACACCCCCAATGGAAATAGCCTCAGTGCTGCGGAACTCACCTGTGGGATGCTCATGTGCCTGGCCAGGCAGATCCCCCAGGCGACGGCTTCGATGAAAGATGGCAAATGGGACCGGAAGAAGTTCATGGGGACAGAGCTGAACGGGAAGACACTGGGAATTCTTGGCCTGGGCAGAATTGGAAGAGAGGTGGCCGCCCGAATGCAGGCCTTTGGAATGAAGACTGTAGGCTATGACCCCATCATTTCTCCAGAAGTCGCTGCCTCCTTTGGTGTTCAGCAGCTGCCGCTAGAGGAGATCTGGCCTCTCTGTGATTTCATCACTGTCCATACCCCGCTCCTGCCCTCCACTACAGGCTTGCTCAATGACAGCACCTTTGCCCAGTGCAAGAAAGGCGTGCGGGTGGTGAACTGTGCTCGAGGAGGCATTGTGGATGAAGGTGCCCTGCTCCGTGCCCTGCAGTCTGGTCAGTGTGCTGGTGCTGCACTGGATGTGTTTACAGAAGAGCCACCACGGGACCGGGCCTTAGTGGACCACGAGAACGTCATCAGCTGTCCCCACCTGGGCGCCAGCACCAAGGAGGCCCAGAGCCGCTGTGGGGAGGAAATCGCAGTCCAGTTTGTGGACATGGTGAAGGGGAAATCTCTAACAGGGGTTGTAAACGCCCAGGCTCTTACCAGTGCCTTCTCTCCACACACCAAGCCTTGGATTGGTCTGGCAGAAGCATTGGGCACACTGATGCACGCCTGGGCTGGCTCCCCTAAAGGGACCATCCAGGTGGTGACACAAGGAACATCTCTGAAGAATGCTGGGACCTGCCTGAGCCCTGCGGTCATTGTCGGCCTTCTGAGAGAAGCATCAAAACAGGCAGATGTGAACTTGGTGAACGCTAAGCTACTGGTGAAAGAGGCTGGCCTCAATGTCACCACCTCCCACAGTCCTGGTGTCCCAGGAGAGCAGGGCATCGGGGAATGCCTCCTGACTGTGGCCTTGGCAGGTGCCCCCTACCAAGCTGTGGGCTTGGTCCAGGGCACCACACCAATGTTGCAGATGCTCAACGGAGCTGTCTTCAGGCCAGAGGTGCCTCTACGCAGGGGCCAGCCCCTGCTCCTGTTCCGGGCTCAGCCCTCCGACCCTGTCATGCTGCCCACTATGATCGGCCTACTGGCAGAGGCGGGGGTACAGCTGCTGTCCTACCAGACCTCCAAGGTGTCTGACGGAGACACTTGGCACGTCATGGGCCTCTCCTCCCTACTGCCCAGCCTGGACGCATGGAAGCAGCATGTTTCTGAGGCTTTCCAGTTCTGCTTCTGACCCAGGGGCTCAGCGGTCCCAGCCCCTCAGGCTCTTCTGAGGAAACCCGCTCACTGTGACCTGAACTAATATCTAGTAAAGAATCTAACTCC
>XM_006233010.1
GGAGGGGGAGGATAAAGGGGGAGCGGGAGATCGAGAACCCTGCCTAGTCACTGGAGCCAGCCCTGCCTTCAGTTTCCTGTACTAAGTGCTTCTGCCCACCAGAGCAACCGATTCTAAGGCCTGGCTCTAGCAATGGCCTTCGCAAATCTGCGCAAAATACTCATCAGTGATAGCCTCGACCCCTGCTGCCGGAAGATCCTGCAAGATGGAGGGCTGCAGGTGGTGGAGAAGCAGAACTTGAGCAAGGAGGAGCTGATAGCCGAACTCCAGGACTGTGAAGGCCTTATCGTCCGGTCAGCTACTAAGGTCACTGCTGATGTCATCAATGCAGCAGAGAAGCTCCAGGTGGTGGGCAGGGCTGGTACAGGCGTGGACAATGTGGATCTGGAGGCTGCCACAAGGAAGGGCGTCCTCGTCATGAACACCCCCAATGGAAATAGCCTCAGTGCTGCGGAACTCACCTGTGGGATGCTCATGTGCCTGGCCAGGCAGATCCCCCAGGCGACGGCTTCGATGAAAGATGGCAAATGGGACCGGAAGAAGTTCATGGGGACAGAGCTGAACGGGAAGACACTGGGAATTCTTGGCCTGGGCAGAATTGGAAGAGAGGTGGCCGCCCGAATGCAGGCCTTTGGAATGAAGACTGTAGGCTATGACCCCATCATTTCTCCAGAAGTCGCTGCCTCCTTTGGTGTTCAGCAGCTGCCGCTAGAGGAGATCTGGCCTCTCTGTGATTTCATCACTGTCCATACCCCGCTCCTGCCCTCCACTACAGGCTTGCTCAATGACAGCACCTTTGCCCAGTGCAAGAAAGGCGTGCGGGTGGTGAACTGTGCTCGAGGAGGCATTGTGGATGAAGGTGCCCTGCTCCGTGCCCTGCAGTCTGGTCAGTGTGCTGGTGCTGCACTGGATGTGTTTACAGAAGAGCCACCACGGGACCGGGCCTTAGTGGACCACGAGAACGTCATCAGCTGTCCCCACCTGGGCGCCAGCACCAAGGAGGCCCAGAGCCGCTGTGGGGAGGAAATCGCAGTCCAGTTTGTGGACATGGTGAAGGGGAAATCTCTAACAGGGGTTGTAAACGCCCAGGCTCTTACCAGTGCCTTCTCTCCACACACCAAGCCTTGGATTGGTCTGGCAGAAGCATTGGGCACACTGATGCACGCCTGGGCTGGCTCCCCTAAAGGGACCATCCAGGTGGTGACACAAGGAACATCTCTGAAGAATGCTGGGACCTGCCTGAGCCCTGCGGTCATTGTCGGCCTTCTGAGAGAAGCATCAAAACAGGCAGATGTGAACTTGGTGAACGCTAAGCTACTGGTGAAAGAGGCTGGCCTCAATGTCACCACCTCCCACAGTCCTGGTGTCCCAGGAGAGCAGGGCATCGGGGAATGCCTCCTGACTGTGGCCTTGGCAGGTGCCCCCTACCAAGCTGTGGGCTTGGTCCAGGGCACCACACCAATGTTGCAGATGCTCAACGGAGCTGTCTTCAGGCCAGAGGTGCCTCTACGCAGGGGCCAGCCCCTGCTCCTGTTCCGGGCTCAGCCCTCCGACCCTGTCATGCTGCCCACTATGATCGGCCTACTGGCAGAGGCGGGGGTACAGCTGCTGTCCTACCAGACCTCCAAGGTGTCTGACGGAGACACTTGGCACGTCATGGGCCTCTCCTCCCTACTGCCCAGCCTGGACGCATGGAAGCAGCATGTTTCTGAGGCTTTCCAGTTCTGCTTCTGACCCAGGGGCTCAGCGGTCCCAGCCCCTCAGGCTCTTCTGAGGAAACCCGCTCACTGTGACCTGAACTAATATCTAGTAAAGAATCTAACTCCA