RCPedia: Genes

Summary

Gene Name	Tpm3	Plot displaying the genomic locations of a parental gene (in chr3) and its retrocopy(ies). Each line represents a retrocopy.
Specie	Mus musculus
Full Name	tropomyosin 3, gamma
Also known as	TM30nm\|TMnm\|Tm5NM\|Tpm-5\|Tpm5\|Trop-5\|gamma-TM\|hTM30nm\|hTMnm
Coordinate	chr3:89979958-90008209
Strand	+
Gene summary	Enables actin filament binding activity. Predicted to be involved in actin filament organization and muscle contraction. Located in cleavage furrow; cytoskeleton; and growth cone. Is expressed in coelomic epithelium of testis; ovary; and primary sex cord. Human ortholog(s) of this gene implicated in congenital fiber-type disproportion and nemaline myopathy 1. Orthologous to human TPM3 (tropomyosin 3). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Tpm3

Retroname	Coord	Strand	Genomic Region	ENSG
Tpm3P1	chr4:27996582-27996906	-	Intergenic	ENSMUSG00000080175	UCSC
Tpm3P2	chr6:66492887-66494441	+	Intergenic	ENSMUSG00000107775	UCSC
Tpm3P3	chr7:10578410-10580192	-	Intergenic	ENSMUSG00000110395	UCSC
Tpm3P4	chr14:113552040-113554146	+	Intergenic	ENSMUSG00000058126	UCSC
Tpm3P5	chr14:95708543-95708718	-	Intragenic	N/A	UCSC

Expression

Transcript Sequences

>NM_001253738.1
TCCACCCTTCACTTTCTGCGGGCTGCCCGAGTGGACTGCGTTCCCGCCTGCTTGGCAGGGGGAGGACGCGCGGTGGCGGCGGCGTCACATCCCGGCGTATGAGTGAGTTCCGGTATTTCAGGGCGGAGCAGGCGGAAGTAGGGTGAAAAGCGGCTACAACGCCGAGCGGAGGAGGTAGGAACCTGATTTCCAGAAGCAGCTTGTAGGCACCATGGCCGGGACCACCACCATCGAGGCGGTAAAGCGCAAGATCCAGGTTCTGCAGCAGCAAGCTGATGATGCGGAGGAAAGGGCCGAGCGCCTCCAGCGGGAAGTGGAGGGAGAAAGGCGGGCCCGGGAGCAGGCTGAAGCTGAGGTGGCCTCCTTGAACCGCAGGATCCAGCTGGTTGAAGAGGAGCTGGACCGTGCGCAGGAGCGCCTTGCCACTGCTTTGCAGAAGctggaggaagcagagaaggctGCTGATGAGAGTGAGAGAGGTATGAAGGTGATTGAAAATCGGGCTctaaaagatgaagaaaagatgGAACTCCAGGAAATCCAGCTAAAGGAAGCAAAGCACATTGCAGAAGAGGCCGATAGGAAGTATGAAGAGGTGGCTCGTAAGTTGGTGATTATTGAAGGAGACTTGGAACGCACGGAGGAACGTGCTGAGCTGGCAGAGTCCCGTTGCCGAGAGATGGATGAACAGATCAGACTGATGGACCAGAACCTGAAGTGTCTGAGTGCTGCTGAAGAAAAGTACTCTCAAAAAGAAGACAAgtatgaagaagaaataaagattctTACTGATAAACTCAAGGAGGCAGAGACCCGTGCTGAGTTTGCTGAAAGATCGGTAGCCAAGCTGGAGAAGACCATTGATGACCTGGAAGATAAACTGAAGTGCACCAAAGAGGAGCatctctgtacacaaaggatgctGGACCAGACCCTGCTGGACCTGAACGAGATGTAGACCTCCCCATCCCTGCCCCGCGGCCATTCCTCCCTCTGACCTTGACTCCGCCAGAGGCCAGCCTCCCTGAAGCTGACCTTGAAACTGAGGGCTGATCTTTTTAACTGAAGGCTGCTTTCCCTCCTGCCACCCCCTTTTACTACCCCTCTTGTCTTTTTCACAAAACTGTGTCAGCCTTTTCCCAGAGTTCCAGTTGGAGGGGCTGAACACCTTTGGGAACAATATTTAAGGGAATGTGAGCACAACGCAGTGTCTTCAATGCAGTTGTGATACGCACATTGTGATTACTTTCTGTCTTAGCAACCATTTTTAACATTCCAAGCACTTCTGCCGCTTGGAGCAGCACATTTTAGCCTAATGGATACTGTCTCGCCATGGAGGAGAAACCCAGGATTGGGCCTGCcttcctgagagccagcagagccCAGGCAGGCTCCACTGTGGGAGACCTCAGTGCTCTGCACCAACTCTTAGCCAAACAACAGGGGGATTCTAGGAAgttagccaaaaacaaaaactgttctgGGCTGTGAAGGTTTTCAGCTTTGGTGTCTTTGAACAATtttacacttatttttattttttactttttccatcAGATGTGACCAAATAAGACAATGAGACGTCTGAGACAGCCCCAcctcccagggcctcatgcatgttaGTTAGGCAAGCGTGCTACCGTTCAGCCCCAGCCCTGAGCCCAAACTTATCGCAGCTCTACCCCTTTCCTAACTGCTCAAAGATGGATCATGCCGCCCCTTAGTGTTGTGGAGACCTCTTAGAGGTCACCTGCCCccaagggagacagagaaaggaaaattatGTTTGTGCCACTGATTTAGCCACATGAACATCATCTCATCGCCCTCTCCTGAAGCTGCGGTCTCTAAAGTGCCATCTCATTGTGCTTTGTATCAGTCAGTGCTGGAGAAATCTTGAATAGCTTatgtgtaaaaaaacaaaaaacaaaaaaaaaactttttaaattttatattattttgaagttttgtttttggggggttgggttAGCTTGGCCAAGCCATTGactgtgagaattctttgcagTCTGTGAGCTAGTGGTGTGCTGATCTTTCAAGTGTCCCCACCCAATTGCCATGTTCAGGTGGTTTCTTCTCGGCCTGTTAGGTGGGCACCCTGCAGATTCCTGGCTTGTTTGTACTCTCCTCCGACCGACCGACCGGAGAAAGAGAACCCCGCAGTGCAACTGTTTTGATACTGAATATCGATAAGTGACATTTTGAAATAAAGAACCAGTCCCTCCACGATCA

>NM_022314.3
GACCCGGGTGGCAGCCCTTCCTCTCTGGCCCCAGCCTCCAGTTCTCCAGTGTTCACAGGTGAGCCCACCAACGGTCACAGCTCATGATGGAGGCCATCAAGAAAAAGATGCAGATGCTGAAGTTAGACAAAGAGAATGTTCTGGACCGAGCTGAGCAAGCTGAAGCTgagcagaaacaggcagaagaaagaagCAAGCAGCTAGAGGATGAACTAGCAACCATgcagaagaagctgaaagggacaGAGGATGAGCTGGACAAGTATTCGGAAGCTTTAAAGGATGCTCAGGAGAAGCTGGAGCTAGCAGAGAAGAAGGCAGCCGACGCTGAAGCTGAGGTGGCCTCCTTGAACCGCAGGATCCAGCTGGTTGAAGAGGAGCTGGACCGTGCGCAGGAGCGCCTTGCCACTGCTTTGCAGAAGctggaggaagcagagaaggctGCTGATGAGAGTGAGAGAGGTATGAAGGTGATTGAAAATCGGGCTctaaaagatgaagaaaagatgGAACTCCAGGAAATCCAGCTAAAGGAAGCAAAGCACATTGCAGAAGAGGCCGATAGGAAGTATGAAGAGGTGGCTCGTAAGTTGGTGATTATTGAAGGAGACTTGGAACGCACGGAGGAACGTGCTGAGCTGGCAGAGTCCCGTTGCCGAGAGATGGATGAACAGATCAGACTGATGGACCAGAACCTGAAGTGTCTGAGTGCTGCTGAAGAAAAGTACTCTCAAAAAGAAGACAAgtatgaagaagaaataaagattctTACTGATAAACTCAAGGAGGCAGAGACCCGTGCTGAGTTTGCTGAAAGATCGGTAGCCAAGCTGGAGAAGACCATTGATGACCTGGAAGATAAACTGAAGTGCACCAAAGAGGAGCatctctgtacacaaaggatgctGGACCAGACCCTGCTGGACCTGAACGAGATGTAGACCTCCCCATCCCTGCCCCGCGGCCATTCCTCCCTCTGACCTTGACTCCGCCAGAGGCCAGCCTCCCTGAAGCTGACCTTGAAACTGAGGGCTGATCTTTTTAACTGAAGGCTGCTTTCCCTCCTGCCACCCCCTTTTACTACCCCTCTTGTCTTTTTCACAAAACTGTGTCAGCCTTTTCCCAGAGTTCCAGTTGGAGGGGCTGAACACCTTTGGGAACAATATTTAAGGGAATGTGAGCACAACGCAGTGTCTTCAATGCAGTTGTGATACGCACATTGTGATTACTTTCTGTCTTAGCAACCATTTTTAACATTCCAAGCACTTCTGCCGCTTGGAGCAGCACATTTTAGCCTAATGGATACTGTCTCGCCATGGAGGAGAAACCCAGGATTGGGCCTGCcttcctgagagccagcagagccCAGGCAGGCTCCACTGTGGGAGACCTCAGTGCTCTGCACCAACTCTTAGCCAAACAACAGGGGGATTCTAGGAAgttagccaaaaacaaaaactgttctgGGCTGTGAAGGTTTTCAGCTTTGGTGTCTTTGAACAATtttacacttatttttattttttactttttccatcAGATGTGACCAAATAAGACAATGAGACGTCTGAGACAGCCCCAcctcccagggcctcatgcatgttaGTTAGGCAAGCGTGCTACCGTTCAGCCCCAGCCCTGAGCCCAAACTTATCGCAGCTCTACCCCTTTCCTAACTGCTCAAAGATGGATCATGCCGCCCCTTAGTGTTGTGGAGACCTCTTAGAGGTCACCTGCCCccaagggagacagagaaaggaaaattatGTTTGTGCCACTGATTTAGCCACATGAACATCATCTCATCGCCCTCTCCTGAAGCTGCGGTCTCTAAAGTGCCATCTCATTGTGCTTTGTATCAGTCAGTGCTGGAGAAATCTTGAATAGCTTatgtgtaaaaaaacaaaaaacaaaaaaaaaactttttaaattttatattattttgaagttttgtttttggggggttgggttAGCTTGGCCAAGCCATTGactgtgagaattctttgcagTCTGTGAGCTAGTGGTGTGCTGATCTTTCAAGTGTCCCCACCCAATTGCCATGTTCAGGTGGTTTCTTCTCGGCCTGTTAGGTGGGCACCCTGCAGATTCCTGGCTTGTTTGTACTCTCCTCCGACCGACCGACCGGAGAAAGAGAACCCCGCAGTGCAACTGTTTTGATACTGAATATCGATAAGTGACATTTTGAAATAAAGAACCAGTCCCTCCACGATCA