Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name RPS4X
Plot displaying the genomic locations of a parental gene (in chrX) and its retrocopy(ies). Each line represents a retrocopy.
Specie Homo sapiens
Full Name ribosomal protein S4 X-linked
Also known as CCG2|DXS306|RPS4|S4|SCAR|SCR10
Coordinate chrX:72272042-72277248
Strand -
Gene summary Cytoplasmic ribosomes, organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes ribosomal protein S4, a component of the 40S subunit. Ribosomal protein S4 is the only ribosomal protein known to be encoded by more than one gene, namely this gene and ribosomal protein S4, Y-linked (RPS4Y). The 2 isoforms encoded by these genes are not identical, but are functionally equivalent. Ribosomal protein S4 belongs to the S4E family of ribosomal proteins. This gene is not subject to X-inactivation. It has been suggested that haploinsufficiency of the ribosomal protein S4 genes plays a role in Turner syndrome; however, this hypothesis is controversial. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. [provided by RefSeq, Jul 2008]

Retrocopy(s) from RPS4X

Retroname Coord Strand Genomic Region ENSG
RPS4XP11 chr10:32102452-32103328 - Intergenic
ENSG00000234335 UCSC
RPS4XP13 chr11:57576228-57577039 - Intergenic
ENSG00000240371 UCSC
RPS4XP4 chr1:20525966-20526681 + Intergenic
ENSG00000215520 UCSC
RPS4XP1 chr12:100008986-100009891 - Intergenic
ENSG00000214203 UCSC
RPS4XP14 chr12:1757183-1758032 - Intragenic
ENSG00000243663 UCSC
RPS4XP26 chr12:55662318-55662492 - Intergenic
ENSG00000270458 UCSC
RPS4XP15 chr12:87944862-87950419 + Intergenic
ENSG00000240721 UCSC
RPS4XP16 chr13:51460504-51461380 + Intergenic
ENSG00000224892 UCSC
RPS4XP17 chr17:656738-657590 - Intergenic
ENSG00000244097 UCSC
RPS4XP18 chr18:22586419-22587232 + Intergenic
ENSG00000239490 UCSC
RPS4XP19 chr18:9019997-9020810 + Intergenic
ENSG00000242058 UCSC
RPS4XP23 chr19:34021661-34021942 + Intergenic
ENSG00000239253 UCSC
RPS4XP22 chr19:9683238-9684096 - Intergenic
ENSG00000239830 UCSC
RPS4XP2 chr20:4629360-4630233 - Intergenic
ENSG00000226948 UCSC
RPS4XP5 chr2:63643260-63644068 - Intergenic
ENSG00000229920 UCSC
RPS4XP6 chr5:37085016-37085918 + Intragenic
ENSG00000244073 UCSC
RPS4XP9 chr6:126683015-126683732 + Intergenic
ENSG00000217404 UCSC
RPS4XP7 chr6:13521244-13522116 + Intergenic
ENSG00000218265 UCSC
RPS4XP8 chr6:154576255-154577141 + Intergenic
ENSG00000219146 UCSC
RPS4XP25 chr8:47546737-47547948 - Intragenic
ENSG00000251354 UCSC
RPS4XP10 chr8:94352920-94353603 + Intergenic
ENSG00000244217 UCSC
RPS4XP27 chrX:42150506-42150684 - Intergenic
ENSG00000228780 UCSC

Expression

Transcript Sequences

>NM_001007.5
AATTTCTACGCGCACCGGAAGACGGAGGTCCTCTTTCCTTGCCTAACGCAGCCATGGCTCGTGGTCCCAAGAAGCATCTGAAGCGGGTGGCAGCTCCAAAGCATTGGATGCTGGATAAATTGACCGGTGTGTTTGCTCCTCGTCCATCCACCGGTCCCCACAAGTTGAGAGAGTGTCTCCCCCTCATCATTTTCCTGAGGAACAGACTTAAGTATGCCCTGACAGGAGATGAAGTAAAGAAGATTTGCATGCAGCGGTTCATTAAAATCGATGGCAAGGTCCGAACTGATATAACCTACCCTGCTGGATTCATGGATGTCATCAGCATTGACAAGACGGGAGAGAATTTCCGTCTGATCTATGACACCAAGGGTCGCTTTGCTGTACATCGTATTACACCTGAGGAGGCCAAGTACAAGTTGTGCAAAGTGAGAAAGATCTTTGTGGGCACAAAAGGAATCCCTCATCTGGTGACTCATGATGCCCGCACCATCCGCTACCCCGATCCCCTCATCAAGGTGAATGATACCATTCAGATTGATTTGGAGACTGGCAAGATTACTGATTTCATCAAGTTCGACACTGGTAACCTGTGTATGGTGACTGGAGGTGCTAACCTAGGAAGAATTGGTGTGATCACCAACAGAGAGAGGCACCCTGGATCTTTTGACGTGGTTCACGTGAAAGATGCCAATGGCAACAGCTTTGCCACTCGACTTTCCAACATTTTTGTTATTGGCAAGGGCAACAAACCATGGATTTCTCTTCCCCGAGGAAAGGGTATCCGCCTCACCATTGCTGAAGAGAGAGACAAAAGACTGGCGGCCAAACAGAGCAGTGGGTGAAATGGGTCCCTGGGTGACATGTCAGATCTTTGTACGTAATTAAAAATATTGTGGCAGGATTAATAGCATTTTGGTTTTGTGGGTTGTTTTTTTTTTTAATTCAGTTTCCTGCTATTTTACTGTATAACATGAACAGTGATTAAGTTCTCAGGCAGGCTTAGGCAGTCTGTTATTGGCTGGGCTTAGTTAGTGGTGGGAAGTAGAAGATACCAGACTTGGGAAAGGAACAGCAACTAACCAAGGAGTAGAAAGAGCCAAGAAATCCCGGAGTATTTATCTCCCCCGCCTTGACTTGGCCAAGAACTTCTCTACACAGTGGACCCCTCTGCCCTGTTAAGTTCCCTTGGCTTTCTAAAAATCTGCCCTCATTTTCTTCTCCAGTCTGTATTGCACTAGCCCATCCACAAGCCTGGCTCATCTGTTTTTCCCACTCCTGTGCCCATCTTGCCAAACGCAGGATGAAAATCTCCAGTTGCCATTAAAGGTGGTCATAAATGGGCTGTTGATGTTGCAAAGCATTGCAGTTCCTTGGACTTAGTGCCCTTATTCTCCAGCTGCCGCTGCAGTCCTCAACTCTGTTTTTCAGAGGACAGAGATGTAGAACATAAACTTGTTCTTGCTTGTCCAAA