Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name RPS15
Plot displaying the genomic locations of a parental gene (in chr19) and its retrocopy(ies). Each line represents a retrocopy.
Specie Homo sapiens
Full Name ribosomal protein S15
Also known as RIG|S15
Coordinate chr19:1438396-1440495
Strand +
Gene summary Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 40S subunit. The protein belongs to the S19P family of ribosomal proteins. It is located in the cytoplasm. This gene has been found to be activated in various tumors, such as insulinomas, esophageal cancers, and colon cancers. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Apr 2015]

Retrocopy(s) from RPS15

Retroname Coord Strand Genomic Region ENSG
RPS15P6 chr1:113198806-113199287 + Intergenic
ENSG00000236887 UCSC
RPS15P8 chr1:234356677-234357159 - Intergenic
ENSG00000235605 UCSC
RPS15P10 chr12:4324346-4324829 - Intragenic
ENSG00000213970 UCSC
RPS15P11 chr15:37490683-37491136 + Intergenic
ENSG00000243122 UCSC
RPS15P4 chr2:171517237-171517737 - Intergenic
ENSG00000233762 UCSC
RPS15P5 chr3:54626196-54626675 + Intragenic
ENSG00000229806 UCSC
RPS15P9 chr5:164600976-164601466 - Intergenic
ENSG00000253600 UCSC
RPS15P7 chr1:171803781-171803929 + Intergenic
ENSG00000213060 UCSC

Expression

Transcript Sequences

>NM_001018.5
CAAAGCGATCTCTTCTGAGGATCCGGCAAGATGGCAGAAGTAGAGCAGAAGAAGAAGCGGACCTTCCGCAAGTTCACCTACCGCGGCGTGGACCTCGACCAGCTGCTGGACATGTCCTACGAGCAGCTGATGCAGCTGTACAGTGCGCGCCAGCGGCGGCGGCTGAACCGGGGCCTGCGGCGGAAGCAGCACTCCCTGCTGAAGCGCCTGCGCAAGGCCAAGAAGGAGGCGCCGCCCATGGAGAAGCCGGAAGTGGTGAAGACGCACCTGCGGGACATGATCATCCTACCCGAGATGGTGGGCAGCATGGTGGGCGTCTACAACGGCAAGACCTTCAACCAGGTGGAGATCAAGCCCGAGATGATCGGCCACTACCTGGGCGAGTTCTCCATCACCTACAAGCCCGTAAAGCATGGCCGGCCCGGCATCGGGGCCACCCACTCCTCCCGCTTCATCCCTCTCAAGTAATGGCTCAGCTAATAAAGGCGCACATGACTCCAG
>NM_001308226.2
CAAAGCGATCTCTTCTGAGGATCCGGCAAGATGGTGAGTGTTGCGATTTGGCGCGTCTCTGCCGGGCCTATCCGGCTCCATCCAACCTCTGACCGTCTCGCGGGGGCCGCAGTTCGTCCCCGCGGCTACGGCGGCTTGCTCCCGACCCTGCAGGCGGCTGGATGTTGGGGCGAGGGGCGGACTTGGCAGAAGTAGAGCAGAAGAAGAAGCGGACCTTCCGCAAGTTCACCTACCGCGGCGTGGACCTCGACCAGCTGCTGGACATGTCCTACGAGCAGCTGATGCAGCTGTACAGTGCGCGCCAGCGGCGGCGGCTGAACCGGGGCCTGCGGCGGAAGCAGCACTCCCTGCTGAAGCGCCTGCGCAAGGCCAAGAAGGAGGCGCCGCCCATGGAGAAGCCGGAAGTGGTGAAGACGCACCTGCGGGACATGATCATCCTACCCGAGATGGTGGGCAGCATGGTGGGCGTCTACAACGGCAAGACCTTCAACCAGGTGGAGATCAAGCCCGAGATGATCGGCCACTACCTGGGCGAGTTCTCCATCACCTACAAGCCCGTAAAGCATGGCCGGCCCGGCATCGGGGCCACCCACTCCTCCCGCTTCATCCCTCTCAAGTAATGGCTCAGCTAATAAAGGCGCACATGACTCCAG