Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name RPS19
Plot displaying the genomic locations of a parental gene (in chr19) and its retrocopy(ies). Each line represents a retrocopy.
Specie Homo sapiens
Full Name ribosomal protein S19
Also known as DBA|DBA1|LOH19CR1|S19|eS19
Coordinate chr19:41860255-41872925
Strand +
Gene summary Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 40S subunit. The protein belongs to the S19E family of ribosomal proteins. It is located in the cytoplasm. Mutations in this gene cause Diamond-Blackfan anemia (DBA), a constitutional erythroblastopenia characterized by absent or decreased erythroid precursors, in a subset of patients. This suggests a possible extra-ribosomal function for this gene in erythropoietic differentiation and proliferation, in addition to its ribosomal function. Higher expression levels of this gene in some primary colon carcinomas compared to matched normal colon tissues has been observed. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. [provided by RefSeq, Jul 2008]

Retrocopy(s) from RPS19

Retroname Coord Strand Genomic Region ENSG
RPS19P8 chr1:113168958-113169442 + Intergenic
 ENSG00000233839 UCSC
RPS19P3 chr14:34568651-34569169 - Intragenic
 ENSG00000240463 UCSC
RPS19P1 chr20:18504597-18505104 + Intergenic
 ENSG00000214612 UCSC
RPS19P10 chr6:110562139-110562643 - Intergenic
 ENSG00000219559 UCSC
RPS19P7 chr10:45073105-45073555 - Intergenic
 ENSG00000228462 UCSC
RPS19P9 chr5:53413849-53414264 + Intergenic
 ENSG00000240052 UCSC

Expression

Transcript Sequences

>NM_001022.4
CCCTTTCCCCTGGCTGGCAGCGCGGAGGCCGCACGATGCCTGGAGTTACTGTAAAAGACGTGAACCAGCAGGAGTTCGTCAGAGCTCTGGCAGCCTTCCTCAAAAAGTCCGGGAAGCTGAAAGTCCCCGAATGGGTGGATACCGTCAAGCTGGCCAAGCACAAAGAGCTTGCTCCCTACGATGAGAACTGGTTCTACACGCGAGCTGCTTCCACAGCGCGGCACCTGTACCTCCGGGGTGGCGCTGGGGTTGGCTCCATGACCAAGATCTATGGGGGACGTCAGAGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCTCCAAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCTGGAGGGGCTGAAAATGGTGGAAAAGGACCAAGATGGCGGCCGCAAACTGACACCTCAGGGACAAAGAGATCTGGACAGAATCGCCGGACAGGTGGCAGCTGCCAACAAGAAGCATTAGAACAAACCATGCTGGGTTAATAAATTGCCTCATTCGTAATCCTGGTCTGGGtctcttttttgagtctcttgctctgtcgcccaggctggagtgcagtggcgccatctcagctcactgcaatctccgccttctgggttcaaatgattctcctgcctcagcctcccaaagtgctgggattacaagtgtgagccactgtgcctggTCTGGTTTGGGTCTCTTGATTGTTCTTCAGGGGCATGAGGAAGAGGCGCTTCCTCCCTTCCCTTGGGTGAGGGGGCCCAGGGTGATTGGGTGGCTGTTTACCCGGCAGCCAGTCGGGCCTTCCCAGGTCAAACAGTTCCCATCTGGGTTTGGAGGAAGGACCCAGGGGCCCTTGTGGCTCACTCCCCCACATCCTGTCTTTGCAATTGTCAGAAAGTGAGAAACGAAAGGATGGCTGTGAGCTGTGACCTCAGCTGGGCCTGGGCTGCAGAGGTGGCTTCCGCTGGAGTAAAGCAAGAGGGCCCAGGGTTCATGCTCTTCCCTGGAAGGTAGAAAAGGACAGACCACCAGGGAGCCTCCACCGCAAACTGACCTGTGCTGCCTACACACTAACTTTCCTGGGCCTGGGGCCTGCACAGGCTGAATGGTCCTTGAGCCTTCACTCTGCATCTGAGCGGTCTTGGGCCCGCTGAGTGGCAGTGGCAGGAAGTCGGTGGAAGCAGATCCCTGTGCAGAAGTTGAATTACCAGGGCGGCCACACACGGGCTGCACAACCTTTGCAGTCGTGCACGGCAAGTGGGATGTGGCCTCCGCCCATGATTGGGCACCTGGTCAGGCTGGGAGATCCAAATAGCACCCAGTGGGCAGCTGTCCGACCCCTGGAGGGGCAAGCCAGGAAAGAAACTTAGGGCCCGCTGTGACCAGATGTCCCTCCCAGTTGGGAAGACTAAACTGGTTTGGCCAATATCTCCCAGGATTCCCCTGTCCAAATTATTCCTGGGATCTGACCCATTTCCtggaaaggggcgagcctgggttttgaagttcaaactagagtttaaatcacaactctgcccctaatcccacgtaaccctgtgcaccttatcctctgagccttcgtctcctcgtgtgtaaGCCTGCTAACTCCTGAGAGACTGGACAAGATGCCGTGGAGAGCCTTGGCTCTGAGTAGCTCTGCTGCTGGACAGTTCAGTTGGCAGTCCCCAAACGTAAGGCGTAAGAGTTTAAGAAGTATCggccaggcacagtggctcacacctgtaatctcaacactttgggaggccgagacgggctgatcacctgaggttgggagcttgagaacagcctgaccaacatggagaaaccctgtctctaaaaataccaaaattagttgggcatggtggcgcgcacctgtaatcccagctactcaggaggctgaggcagaagaatcgctcgaaccccggaggcggaggttgcagtgggttgagatcgagcaattgcaatccagcctgggcaacagagcgagactccatttcaaaaaaagaatcaataaaaaTGTTAAAAGCA
>NM_001321484.2
CCCTTTCCCCTGGCTGGCAGCGCGGAGGCCGCACGGTAAGCGGGGGCTCCGAGCTGGACCGGGCGCGAGGCGGCAGGGCCGGACGCCGAAGCCTCAGAGCGCGTGCCTGAGGGCCCCGAGGCGCCCGGCGCGGGCCCGTCCCGCCCCCTAGAGCCGCGGCCACGTGCGAGCGGCAGGCCCGGACATGCCCGATGCCTGGAGTTACTGTAAAAGACGTGAACCAGCAGGAGTTCGTCAGAGCTCTGGCAGCCTTCCTCAAAAAGTCCGGGAAGCTGAAAGTCCCCGAATGGGTGGATACCGTCAAGCTGGCCAAGCACAAAGAGCTTGCTCCCTACGATGAGAACTGGTTCTACACGCGAGCTGCTTCCACAGCGCGGCACCTGTACCTCCGGGGTGGCGCTGGGGTTGGCTCCATGACCAAGATCTATGGGGGACGTCAGAGAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCTCCAAGAGTGTGGCCCGCCGGGTCCTCCAAGCCCTGGAGGGGCTGAAAATGGTGGAAAAGGACCAAGATGGCGGCCGCAAACTGACACCTCAGGGACAAAGAGATCTGGACAGAATCGCCGGACAGGTGGCAGCTGCCAACAAGAAGCATTAGAACAAACCATGCTGGGTTAATAAATTGCCTCATTCGTAATCCTGGTCTGGGtctcttttttgagtctcttgctctgtcgcccaggctggagtgcagtggcgccatctcagctcactgcaatctccgccttctgggttcaaatgattctcctgcctcagcctcccaaagtgctgggattacaagtgtgagccactgtgcctggTCTGGTTTGGGTCTCTTGATTGTTCTTCAGGGGCATGAGGAAGAGGCGCTTCCTCCCTTCCCTTGGGTGAGGGGGCCCAGGGTGATTGGGTGGCTGTTTACCCGGCAGCCAGTCGGGCCTTCCCAGGTCAAACAGTTCCCATCTGGGTTTGGAGGAAGGACCCAGGGGCCCTTGTGGCTCACTCCCCCACATCCTGTCTTTGCAATTGTCAGAAAGTGAGAAACGAAAGGATGGCTGTGAGCTGTGACCTCAGCTGGGCCTGGGCTGCAGAGGTGGCTTCCGCTGGAGTAAAGCAAGAGGGCCCAGGGTTCATGCTCTTCCCTGGAAGGTAGAAAAGGACAGACCACCAGGGAGCCTCCACCGCAAACTGACCTGTGCTGCCTACACACTAACTTTCCTGGGCCTGGGGCCTGCACAGGCTGAATGGTCCTTGAGCCTTCACTCTGCATCTGAGCGGTCTTGGGCCCGCTGAGTGGCAGTGGCAGGAAGTCGGTGGAAGCAGATCCCTGTGCAGAAGTTGAATTACCAGGGCGGCCACACACGGGCTGCACAACCTTTGCAGTCGTGCACGGCAAGTGGGATGTGGCCTCCGCCCATGATTGGGCACCTGGTCAGGCTGGGAGATCCAAATAGCACCCAGTGGGCAGCTGTCCGACCCCTGGAGGGGCAAGCCAGGAAAGAAACTTAGGGCCCGCTGTGACCAGATGTCCCTCCCAGTTGGGAAGACTAAACTGGTTTGGCCAATATCTCCCAGGATTCCCCTGTCCAAATTATTCCTGGGATCTGACCCATTTCCtggaaaggggcgagcctgggttttgaagttcaaactagagtttaaatcacaactctgcccctaatcccacgtaaccctgtgcaccttatcctctgagccttcgtctcctcgtgtgtaaGCCTGCTAACTCCTGAGAGACTGGACAAGATGCCGTGGAGAGCCTTGGCTCTGAGTAGCTCTGCTGCTGGACAGTTCAGTTGGCAGTCCCCAAACGTAAGGCGTAAGAGTTTAAGAAGTATCggccaggcacagtggctcacacctgtaatctcaacactttgggaggccgagacgggctgatcacctgaggttgggagcttgagaacagcctgaccaacatggagaaaccctgtctctaaaaataccaaaattagttgggcatggtggcgcgcacctgtaatcccagctactcaggaggctgaggcagaagaatcgctcgaaccccggaggcggaggttgcagtgggttgagatcgagcaattgcaatccagcctgggcaacagagcgagactccatttcaaaaaaagaatcaataaaaaTGTTAAAAGCA