Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Atp5pd
Plot displaying the genomic locations of a parental gene (in chr10) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name ATP synthase peripheral stalk subunit d
Also known as Atp5h|Atp5jd|Atpq
Coordinate chr10:103967340-103972552
Strand -
Gene summary Predicted to enable proton transmembrane transporter activity. Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Involved in ATP metabolic process and cellular response to peptide. Part of mitochondrial proton-transporting ATP synthase complex, coupling factor F(o). Used to study mental depression. Biomarker of congenital hypothyroidism. Orthologous to human ATP5PD (ATP synthase peripheral stalk subunit d). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Atp5pd

Retroname Coord Strand Genomic Region ENSG
Atp5hP1 chr4:170369809-170370246 + Intragenic
 N/A UCSC
Atp5hP2 chr5:173003499-173004077 - Intragenic
 N/A UCSC
Atp5hP4 chr15:24434836-24435093 - Intergenic
 N/A UCSC
Atp5hP5 chr15:64222872-64223172 - Intergenic
 N/A UCSC
Atp5hP3 chr5:80810106-80810536 + Intergenic
 N/A UCSC
Atp5hP6 chr16:51816469-51817073 + Intragenic
 N/A UCSC

Expression

Transcript Sequences

>NM_019383.2
GTTCCTTTCTGCTGGAGACAGCGCTCCGCCGGGGGTCGGTGAAGTATCCAAGATGGCTGGGCGCAAACTTGCTCTAAAAACCATCGATTGGGTATCTTTTGTGGAGATCATGCCCCAAAACCAGAAGGCAATTGGAAACGCTCTGAAGTCCTGGAATGAGACCTTCCACACCAGGTTGGCTAGTCTGTCTGAGAAACCACCAGCGATTGACTGGGCTTACTACAGGGCCAATGTGGACAAGCCTGGCTTGGTGGATGATTTTAAAAACAAGTATAATGCTCTGAAGATCCCTGTGCCTGAGGATAAATACACAGCCCTAGTGGACGCCGAGGAGAAGGAGGATGTGAAGAACTGTGCCCAGTTCGTGACTGGATCTCAGGCTAGGGTCCGGGAATATGAGAAGCAGCTGGAGAAAATAAAGAACATGATTCCCTTTGACCAGATGACGATTGATGACTTGAATGAGGTCTTCCCTGAAACCAAGCTGGACAAGAGGAAGTACCCATACTGGCCCCATCAGCCCATCGAGAACCTGTGAAGCAGCCCAGGAGGGAGCCCTGGCTGACTTGAAATAAAAcatttacatagtcttgttatggtc
>XM_008768390.2
TGGATTGGCCAAAGAGGGAACTTCCGGTAACACACTTCCGTTCCTTTCTGCTGGAGACAGCGCTCCGCCGGGGGTCGGTGAAGTATCCAAGATGGCTGGGCGCAAACTTGCTCTAAAAACCATCGATTGGGTATCTTTTGTGGAGATCATGCCCCAAAACCAGAAGGCAATTGGAAACGCTCTGAAGTCCTGGAATGAGACCTTCCACACCAGGTTGGCTAGTCTGTCTGAGAAACCACCAGCGATTGACTGGGCTTACTACAGGGCCAATGTGGACAAGCCTGGCTTGGTGGATGATTTTAAAAACAAGGTGAAGAACTGTGCCCAGTTCGTGACTGGATCTCAGGCTAGGGTCCGGGAATATGAGAAGCAGCTGGAGAAAATAAAGAACATGATTCCCTTTGACCAGATGACGATTGATGACTTGAATGAGGTCTTCCCTGAAACCAAGCTGGACAAGAGGAAGTACCCATACTGGCCCCATCAGCCCATCGAGAACCTGTGAAGCAGCCCAGGAGGGAGCCCTGGCTGACTTGAAATAAAAcatttacatagtcttgttatggtctttaagtaga