Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name GPBP1
Plot displaying the genomic locations of a parental gene (in chr5) and its retrocopy(ies). Each line represents a retrocopy.
Specie Homo sapiens
Full Name GC-rich promoter binding protein 1
Also known as GPBP|SSH6|VASCULIN
Coordinate chr5:57174059-57264679
Strand +
Gene summary This gene was originally isolated by subtractive hybridization of cDNAs expressed in atherosclerotic plaques with a thrombus, and was found to be expressed only in vascular smooth muscle cells. However, a shorter splice variant was found to be more ubiquitously expressed. This protein is suggested to play a role in the development of atherosclerosis. Studies in mice suggest that it may also function as a GC-rich promoter-specific trans-activating transcription factor. Several alternatively spliced transcript variants encoding different isoforms have been described for this gene. [provided by RefSeq, Feb 2011]

Retrocopy(s) from GPBP1

Retroname Coord Strand Genomic Region ENSG
GPBP1P1 chr4:158462844-158470615 + Intergenic
ENSG00000248387 UCSC

Expression

Transcript Sequences

>NM_022913.4
ATTGCGGATCGGGTCGGCGCCATTTTGGGACTGAGACTGGTTGTGGGGGAGGGAAAAGCGGCAAAAGGGGATTATTCAAAGTACCGAAAACCTTCTCCCGGGATCAGGCGCGGCGGCACCCCCAGGCCAGGGGCACCTCTGGTGGGGCAGAAGGTGATTGAATTACTCAGATATGAAGATCATCATCTAGGTTTTGTGTAAAAGGCCCTGGATATTTTAAGTGGCCATTTTGGATTTACAGTGTTTTTGGATAATTTTGCCCCAGAAGTTTATTAAAATTGGCAAGAATCGTCTGTGAAGTGAATTGATAGTAGTGAACAATTCAGCAAGCTACTTAAAAAGAGACCCAGGCAGCATTTCTTCAGTATTTTGGTTCAAACGGATTATATAACTGGTTACAGTATTTCAGCTGGTGGTAATTTTTGCCTCCCCTTCCCCCACCCCGTTGTTGGGGTTCTTCAGCCGAAACTGAGAGACGTTGATTTGTGTACTGAGTAGTTTCAGCAGTTTCAAATGACTGAGTATTGCTGAAGTTTCATGGCAGTTTATTTTTACCTTTATTGAAAGTTTTAGGAATTTTTGACTTCAGCTCTTTCATGTCACAATGGGACACTTTTTCTGAATGAAGAGATTGAAAGAATACAGAGTTTTTTTCCTTTTATCTTTTATTTACGTGGAAATTTAAGATGTTGCAGTTTTCCGGCAGCATGGTAGTATTGAGATAGCTATGTGTGTCTCTGTATATGCTGATGTTTAGGAATGCTCTTCAGATGTGAAATTTTCTTTTTGTTTTTGCTTTTTGGCTCGTAAATTGGATATTTCATCTGGAGTGGACAAGTACAACAGTGGCAAGTACATGGAATAATAAAGAAGACTTTGATCTTAAATCTAAAGAACTTGGCTAATTCGGGAGATAGCCATATGAAAACTTTAAAACAGAAGTATGGGTAGCTGACTTGAAGTAACTCTATGTCAAATAGTCGTAGGTTAAGTATCTTCAAAGAACTTCGATATTATTTCAGAGGATACAAAATAAAAATACAAACTGGAAAATAAAGATTACAGAGAAAAAACCAACACCTTCCTGTGCAGTCCTGTTGGAATTTGGACTTGCCATGAGGTGTTGAAGCCTTGTTTCACTGAGTTGGAGAGACTGGACCTAAATGGCGCAGCATGACTTTGCTCCAGCCTGGCTTAATTTCCCTACTCCACCATCATCAACAAAGTCGTCATTGAATTTTGAGAAGCATTCTGAAAACTTTGCATGGACAGAGAATCGTTATGATGTGAACCGTCGACGACACAACTCTTCAGATGGCTTTGATTCTGCTATTGGGCGTCCTAATGGAGGTAACTTTGGAAGGAAAGAAAAAAATGGATGGCGTACACATGGAAGAAATGGTACAGAAAACATAAATCATCGAGGTGGATACCATGGTGGAAGTTCCCGTTCTCGTAGCAGTATTTTCCATGCAGGAAAAAGCCAAGGACTACATGAAAACAACATACCTGACAATGAAACCGGGAGGAAAGAAGACAAGAGAGAACGCAAACAGTTTGAAGCTGAGGATTTTCCGTCTTTAAATCCTGAGTATGAGAGAGAACCAAATCACAATAAGTCTTTAGCTGCAGGTGTGTGGGAATATCCTCCGAATCCTAAATCTAGAGCTCCAAGGATGCTGGTCATTAAGAAAGGTAATACAAAAGACTTACAGCTATCTGGATTCCCAGTAGTAGGAAATCTTCCGTCACAGCCAGTTAAGAATGGAACTGGTCCAAGTGTTTATAAAGGTTTAGTCCCTAAACCTGCTGCTCCACCTACAAAACCTACACAATGGAAAAGCCAAACAAAAGAAAATAAAGTTGGAACTTCTTTCCCTCATGAGTCCACATTTGGCGTTGGCAACTTTAATGCTTTTAAATCAACTGCCAAGAACTTTAGTCCATCTACAAATTCAGTGAAAGAGTGTAATCGCTCAAATTCCTCTTCTCCTGTTGACAAACTTAATCAGCAGCCTCGTCTAACCAAACTGACACGAATGCGCACTGATAAGAAGAGTGAATTTTTGAAAGCATTGAAAAGAGACAGAGTAGAAGAGGAACATGAAGATGAAAGCCGTGCTGGCTCAGAGAAGGATGACGACTCATTTAATTTACATAACAGCAATAGTACTCACCAAGAAAGGGATATAAACCGAAACTTCGATGAAAATGAAATTCCTCAAGAGAATGGCAATGCCTCAGTGATTTCCCAGCAGATCATTCGGTCTTCAACCTTCCCACAAACTGATGTTCTTTCAAGTTCACTTGAGGCAGAACACAGATTGTTAAAGGAAATGGGCTGGCAGGAAGACAGTGAAAATGATGAAACATGTGCTCCCTTAACTGAGGATGAAATGAGAGAATTCCAAGTTATTAGTGAACAGTTACAGAAGAATGGTCTGAGAAAAAATGGTATTTTGAAAAATGGCTTGATCTGTGACTTCAAGTTTGGACCGTGGAAGAACAGCACTTTCAAACCCACAACTGAGAATGATGACACAGAGACAAGTAGCAGTGATACATCAGATGACGACGATGTGTGAAGGATTTCCTAACAGCTTTAGAAATCTTAGTGTGATACATCTCTCATACAGTTTGGGGTGAATTGTAAAAATGAAGAACTATAATTTATGTAGTGAAATACCCCATTAGAAGAGGATTTTTTGGGGGACTTCAATATGAAGAAAACCAAGAATGTTTTGTTGGGCTGTGTTGAACATTATTTCTTTGTAAATGAATGTTGTAGGAATGAGGACTTGGGTTGGTCCAACATTGACTTTCTTCATCACTGCAACATTTCTCTGACTAGCAATGTGACGATGTAACAAATGAGATTTTCTCATTTAATAATAAAAAATTGTGTAATGTTTTGCAAAGCTTCTGTCTTAAAATGTCCAGGTCTTAAGAAAAAAGGCAGCTTACACTGTTTTGCTTGCAGAGTCATATCTTTTTCGTACAATGGAAATCCTCAAGTCCACTTTGTGCGGTCTCCCTCTCCTTCCCCCAaaaaacaacaacaacaaaacaaaaaccaaaaaggaaaaTGTAGCATGTTGGCTAAAACTGGAGCAAAGTGCACTAAAACAATTTCCTGAACTCACCTGTTGTACTATTCACCTTTTAAACCATAAATTGCTCTTTAGCCATTTGTAGTGCAGTAAATGTTACAGGAAAAGACTTGGCACATTTTCTTCCAAATTTTAAGAGGTGATTTTCAAAAGCTTTATTGGGGTATGTTGTCAGACCAGGGTTTTCAGAGTTGATGGAAAAGAGTCTTGTGAGAAAACTTATTTTGATAAATTATTACACACGCAGAAAAACTGATCACACTGACTGGATCTGTCCACGACATGGAAAATAAACTGGATTTTCAGAATATTGTTGTTTTCTGTAGTGTTCAAGGTATTGTTTCTAAACATAAACATACTCTAAACATGCTTTATTCACTTGTTAAAGTCATACTTTTAAAAGTAATACCTTACTAAAGATGGTGATTACTTTTCCGAGGTCAGAAAAGGAAAGCTAAGCGTTTTCATTATCAAATACACAAGCTTATTAAATGAATGACTGTTAACTACTTTATTTTCATTTGCACATTAATTTTGGAATTGTTTCTGTTTTGCTGCTGACGGAAATACTATTTTGGCTCTGTGTATATTTGTATTTTGATTTTTCTGGTTTGTTTACCCCCATTTGCTTTTAGCTCCCCCTTATGTTTAAATATATTCTAACTTATGTAAAGAGCATAATCTTAGAGCAAAAATACTTGAGGTTTTATGTCAGATCTAATCTTAAGTGTTTGTTGTTTTTTAAAAAGTGTTTTCTCAGATGGCTGCAGTGTTTTTGCTATTTCTGCATAAATACCCTACCTGGACTCCCCAGTTTTCACCAGAAACTGTTATTTTTTTTTGTTGTTGTTCCCACTGAGACTGATGGTGATGGGGAAATTAAAAACAACACACTAGCACACTCCCACAAAACTTGAGGAAGAGTTAGAATGGTAATAAAATATTAAATAGACCTTATACTTAAAATAAGGTTTCACTATATAATTTGTCACAATTCAATCTAATCAGCTAAAGTTAAATGTAGTTAGAATTAGCCACAGGAGAATGTAAAGCATGCTTTGACGAAGCTATCGGTAACACATATTGAATGTCTTTGAGACTCTTAGATTGTACTATTTGCTTAATAGATTAATGAAATTTATCAGATACAACCTGTATTTCCAAAAACAAGCTAGAAGGAACCTGAGGAATGTGGTTTACATTTGAGATCCACCTTACTGTGTTTTCTACTTTCAGAAAAGATTCTGTAGTTTTGGTTTTTGGCATCTTTCTTATACTCAGTTTTTTCTGCCTTAATTCCCATTTACCAGCAGTTAACTCATGTTTATTGTGCTTTCATGCATTGTGATATGGAATGTGTTTAGTAATTTACTCCTTATAAATATGGTAAAGTACA