Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Litaf
Plot displaying the genomic locations of a parental gene (in chr10) and its retrocopy(ies). Each line represents a retrocopy.
Specie Rattus norvegicus
Full Name lipopolysaccharide-induced TNF factor
Also known as EET-1|Pig7
Coordinate chr10:4753546-4763272
Strand +
Gene summary Predicted to enable several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; WW domain binding activity; and zinc ion binding activity. Involved in aging. Predicted to be located in several cellular components, including cytoplasmic side of endosome membrane; cytoplasmic side of lysosomal membrane; and cytoplasmic side of plasma membrane. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 1C. Orthologous to human LITAF (lipopolysaccharide induced TNF factor). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Litaf

Retroname Coord Strand Genomic Region ENSG
LitafP1 chr4:49764069-49765739 - Intergenic
 N/A UCSC

Expression

Transcript Sequences

>NM_001105735.2
GGTAAAATGTCGGCTCCAGGACCTTACCAAGCAGCTGCAGGCCCTTCTGTAATGCCTACTGCACCCCCAACCTATGAAGAAACAGTGGGTGTCAACAGTTACTACCCAACGCCCCCAGCACCTCAGCCGGGACCAGCCACAGGGCTCATTACGGGCCCGGATGGGAAGGGCATGAATCCACCTTCGTACTACACCCAGCCCGTGCCTGTCCCCAACGCCAACGCAATTGCAGTGCAGACGGTTTATGTGCAGCAGCCCATCTCCTTCTACGACCGCCCCATCCAGATGTGCTGTCCTTCCTGCAACAAGATGATCGTGACCCAGTTGTCCTACAATGCAGGAGCCCTCACCTGGCTCTCCTGTGGCAGTCTGTGTCTGCTGGGATGCGTCGCTGGCTGCTGCTTCATTCCGTTTTGCGTGGACGCCCTGCAGGATGTGGACCATTACTGCCCCAACTGCAAAGCGCTCCTGGGCACCTACAAACGTTTGTAGGACTCGGCCAGCCACAGGGGAGGTAGACAAGTGCTCCCGGAAGTCACCCAACCCTTGCCCAGCGCAGCCAGAAGACGTCCCTTCCTTGATCTCTTCATGAGCTCGTCTTCGTGTCTTTTAGGGGGTGGGGAAAGTCGGAAAAGTAACAAACCCCCAAACCCAGAAACTGCTGCTGGAGTTGTGCCCTGCACATGCAAAGACGTGGACCTTGGGTGTTGCTTTAAGGGTTTACCGCCTGATCTCGTTACCCCACTAACTGTGATTGTTACTCCATTTGCATCTCGTCTGCTGATTTGCCACTGCCTGCCCCCTCTTCCTCAAGAAGAGGCCTTCCTGGTGCCAGGCTCAAAACCCGAAGCTACAGTTTGCCTTATTTTTCACTGTTTGGCTTGATCTGTACCATCTCTCCCAGCCCTAATGACAGAGACCTTGCCTTAAAGACTTTGCGGTTCTGTAATTGCAGACTTCTCCAGCACTCAGAATCACTTTAATTCCATAGAGTTGTTCCTCTCCACACACACCCCTCCCCCGGTGCACAGAAGGGCTGCCGACACCCACCAGACTCATACAGAGAAGGTCACAAGTACTAAATGAAAGGCTCCCAGCCCACCTTGTCTCAGCCCCTGTCCTGTGAAGGGACTCCTTCCTCACACAGTTTCTGTGACTTCCTTTTGTTCTTAAACACATGGAAGTTACTTGGCAGGGAGACATTTCTAGAATAATTTTTGTGATCACGATACACCCTTCATTCTCCGTTTGCTGGTATGTTTTTAGTTGGTTTGGTTTTAGTTTTCCACATACAGTCTAGCTCGTGGCCAGCCTTGAGCTCCGAGGAGATCCTCCATCTTCTCCTCTCAAATACCCAGGGCCCAGACATTTGCCTCTGCACCTGCTGGGCTTTTTCTCTCATTTTTCCTTAACAGAAAAACAAACGGGTAATTTCATCGACTGCCTATGTAGGTTTGGTGTGGTTTTGAAAACCTTGTTTCCATGGGGCCCCTTTGGGGGAGTCAGGGGGCCCCTGCACGAGCCCATGCTTCAATGCCGAGAGATTGGCTGCTGGAACCCCCTGAAGCATGATTTCATGTTTTAGAGATGAGCTTCTGTGGTACGGTCATCATGGTCTCCAACATCAACAGACAAGGTAGAAGGATGTCAACGACAAAGATAAGTTCAGGGCTCTTTCTAGGGTCACCACTCTGTCCTGTGTAACACTGACACAGTCTGGCCAGCCTTTCAGGAGGTCCTGGCTCCCTCCTAAACCCATGTAGGATCTGCTGCAAGTAACAGTGTATGAAGTCAACCTGACCTGGAACAGAAGTCTGCATATTGGTTAAGATACAGCCTATGTATCTTCATACAACGATCCAGAAGTACTAGACATCATTTTTGCAGTGAATTATGGGTACCATACATGACTTTGATGATATCTGCTTTTAAACAAATAAAATCTTTGATCACTCA