Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Lsm7
Plot displaying the genomic locations of a parental gene (in chr10) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated
Also known as 0910001B06Rik|1110033F18Rik
Coordinate chr10:80688659-80691043
Strand -
Gene summary Predicted to enable protein heterodimerization activity. Predicted to contribute to RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of several cellular components, including Lsm1-7-Pat1 complex; spliceosomal complex; and spliceosomal snRNP complex. Is expressed in central nervous system and sensory organ. Orthologous to human LSM7 (LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Lsm7

Retroname Coord Strand Genomic Region ENSG
Lsm7P1 chr2:3551777-3552235 + Intergenic
 ENSMUSG00000082580 UCSC
Lsm7P2 chr10:70983998-70984300 + Intragenic
 ENSMUSG00000112566 UCSC
Lsm7P5 chrX:132627711-132628016 - Intragenic
 N/A UCSC
Lsm7P3 chr10:78229137-78229590 + Intergenic
 ENSMUSG00000064317 UCSC
Lsm7P4 chr18:66694842-66695006 - Intergenic
 ENSMUSG00000118187 UCSC

Expression

Transcript Sequences

>NM_001359148.1
GCAGAGCGACGTGAGGCGACAAGATGGCGcaggacaaagagaaaaagaagaaagaaagcatcttggACCTCTCCAAGTACATCGATAAGACCATTCGGGTGAAGTTCCAGGGTGGCCGGGAAGCCAGCGGTATCCTGAAGGGCTTTGACCCACTGCTCAACCTGGTGCTGGATGGGACCATGGAGTACATGAGAGACCCTGATGACCAGTACAAGCTGACGGAGGACACTCGGCAGCTGGGGCTTGTCGTATGTCGTGGCACCTCGGTGGTGCTCATCTGCCCACAGGACGGCATGGAGGCCATCCCCAACCCCTTCGTGCAGCAGCAGGACACTTAGCAGCAAAGGAGAGCGGTCCAGCCCCAGGGATCTTCCTTCTATGGGGTGAACTTCTGTGTGATGTTTTggtcttttgttcttgttttgttttgttttgttttttaataaaattgcCCATGTGAgcatctccctc
>NM_001359150.1
GCAGGGCCGCGGGATCGAGGGTCTGTGGAAGCGAGAGCAGAAAGACTGAAAGGAGAGTGACGGACGCCCTAGAGTAGGGAGACAGGGTGCTGAAGGATGGGAGCCACGTGGGACTGCAGACGGAAGCCATGGgacaaagagaaaaagaagaaagaaagcatcttggACCTCTCCAAGTACATCGATAAGACCATTCGGGTGAAGTTCCAGGGTGGCCGGGAAGCCAGCGGTATCCTGAAGGGCTTTGACCCACTGCTCAACCTGGTGCTGGATGGGACCATGGAGTACATGAGAGACCCTGATGACCAGTACAAGCTGACGGAGGACACTCGGCAGCTGGGGCTTGTCGTATGTCGTGGCACCTCGGTGGTGCTCATCTGCCCACAGGACGGCATGGAGGCCATCCCCAACCCCTTCGTGCAGCAGCAGGACACTTAGCAGCAAAGGAGAGCGGTCCAGCCCCAGGGATCTTCCTTCTATGGGGTGAACTTCTGTGTGATGTTTTggtcttttgttcttgttttgttttgttttgttttttaataaaattgcCCATGTGAgcatctccctc
>NM_025349.2
GCAGAGCGACGTGAGGCGACAAGATGGCGgacaaagagaaaaagaagaaagaaagcatcttggACCTCTCCAAGTACATCGATAAGACCATTCGGGTGAAGTTCCAGGGTGGCCGGGAAGCCAGCGGTATCCTGAAGGGCTTTGACCCACTGCTCAACCTGGTGCTGGATGGGACCATGGAGTACATGAGAGACCCTGATGACCAGTACAAGCTGACGGAGGACACTCGGCAGCTGGGGCTTGTCGTATGTCGTGGCACCTCGGTGGTGCTCATCTGCCCACAGGACGGCATGGAGGCCATCCCCAACCCCTTCGTGCAGCAGCAGGACACTTAGCAGCAAAGGAGAGCGGTCCAGCCCCAGGGATCTTCCTTCTATGGGGTGAACTTCTGTGTGATGTTTTggtcttttgttcttgttttgttttgttttgttttttaataaaattgcCCATGTGAgcatctccctc