Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Snw1
Plot displaying the genomic locations of a parental gene (in chr12) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name SNW domain containing 1
Also known as 2310008B08Rik|NCoA-62|SKIP|Skiip
Coordinate chr12:87496680-87519069
Strand -
Gene summary Predicted to enable several functions, including Notch binding activity; nuclear receptor binding activity; and transcription coactivator activity. Involved in cellular response to retinoic acid and positive regulation of neurogenesis. Acts upstream of or within skeletal muscle cell differentiation. Predicted to be located in chromatin; cytoplasm; and nuclear lumen. Predicted to be part of SMAD protein complex; U2-type catalytic step 2 spliceosome; and cyclin/CDK positive transcription elongation factor complex. Is expressed in several structures, including alimentary system; brain; genitourinary system; respiratory system; and sensory organ. Human ortholog(s) of this gene implicated in breast cancer and pancreatic cancer. Orthologous to human SNW1 (SNW domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Snw1

Retroname Coord Strand Genomic Region ENSG
Snw1P1 chr1:166597446-166598050 + Intergenic
 ENSMUSG00000085841 UCSC
Snw1P2 chr12:87730674-87730945 - Intergenic
 ENSMUSG00000114074 UCSC
Snw1P3 chr13:64657296-64659019 + Intergenic
 ENSMUSG00000094597 UCSC
Snw1P6 chr15:48763475-48763747 + Intergenic
 ENSMUSG00000115462 UCSC
Snw1P4 chr14:102727032-102727593 - Intragenic
 N/A UCSC
Snw1P5 chr14:26641452-26642116 + Intergenic
 N/A UCSC
Snw1P7 chr18:80060122-80060323 + Intergenic
 N/A UCSC

Expression

Transcript Sequences

>NM_025507.2
GGCGACGTTGTGGCCTGCGCAGGAAGAAGCGGAAGAAGATGGCGCTCACCAGCTTTTTACCTGCGCCTACTCAGCTGTCTCAGGACCAACTTGAAGCTGAAGAAAGGGCAAGATCTCAGAGATCACTGCAGACCTCTCTGGTCTCCTCTCGAAGGGAGCCTCCCCCATACGGATATAGGAAAGGCTGGATTCCAAGACTATTAGAGGATTTTGGAGATGGAGGTGCTTTCCCAGAAATCCATGTGGCCCAGTATCCTCTGGATATGGGGCGAAAGAAAAAAATGTCGAATGCTCTGGCCATTCAGGTGGATCCTGAAGGGAAAATTAAGTATGATGCAATTGCTCGGCAGGGACAGTCCAAAGACAAGGTCATTTACAGCAAATACACTGACCTGGTTCCTAAGGAGGTTATGAATGCAGATGACCCAGACCTGCAACGGCCCGATGAAGAGGCAATTAAAGAGATAACAGAAAAGACTAGAGTTGCCTTGGAGAAATCTGTGTCGCAGAAGGTTGCTGCAGCCATGCCAGTTCGTGCAGCTGACAAGCTGGCTCCTGCTCAGTATATCCGCTACACACCATCTCAGCAAGGAGTAGCATTCAATTCTGGAGCTAAACAGAGGGTCATTCGGATGGTAGAAATGCAGAAAGACCCAATGGAGCCTCCAAGATTCAAGATTAATAAGAAAATTCCCCGGGGACCACCGTCTCCTCCTGCACCTGTAATGCACTCTCCTAGTCGGAAGATGACTGTAAAGGAACAACAAGAGTGGAAGATCCCGCCTTGTATTTCCAACTGGAAGAACGCTAAGGGGTATACGATCCCATTAGATAAACGGCTGGCTGCTGATGGAAGAGGACTTCAGACTGTCCACATAAATGAAAATTTTGCCAAACTGGCTGAAGCGCTCTACATTGCTGATCGGAAGGCTCGTGAAGCGGTGGAAATGCGAGCCCAGGTAGAGAGAAAGATggctcaaaaagaaaaggagaaacatgaaGAGAAACTTAGAGAAATGGCCCAGAAAGCCAGAGAAAGGAGAGCTGGAATCAAAACCCACGTGGAGAAAGAGGATGGAGAGGCCCGTGAGAGAGATGAAATCCGTCATGACAGGCGAAAAGAGAGACAGCATGACCGGAACCTTTCCAGGGCAGCTCCTGATAAGAGGTCAAAactacagagaaatgaaaatcgaGACATCAGTGAAGTCATTGCTCTTGGTGTGCCCAATCCTCGAACTTCCAATGAAGTTCAGTATGACCAAAGGCTCTTCAACCAATCCAAGGGTATGGACAGTGGATTTGCAGGTGGAGAAGATGAAATTTACAATGTTTATGATCAAGCCTGGAGAGGTGGGAAAGATATGGCCCAGAGCATCTACAGGCCCAGTAAAAATCTGGACAAGGACATGTATGGTGATGACCTGGAAGCCAGGATAAAGACCAACAGATTTGTTCCTGATAAGGAGTTTTCTGGATCAGACCGCAAACAGAGAGGCCGAGAAGGACCAGTGCAGTTTGAGGAGGATCCTTTTGGTTTGGACAAGTTTTTGGAAGAAGCCAAACAGCACGGTGGTTCTAAAAGACCCTCTGATAGCAGTCGCCCCAAGGAACATGAGCATGAAGGCAAGAAGCGGAGGAAAGAGTAGAGGGACCTCTTAAAACTAAATCtgacatatgcagcagaggactgcctggtctggcctcattGTGAacagatgtccccaccccctccagaCACTTGAGACTCCAGGGAATAGGGCGTCctagtgggtgggggtggggacatcctcttggaaatgggggaggaggaatgggatgaggaatcaTCAGAGAGATGaccaggagggagataaagactggactgttaaaaaaaaaaaaaagattaaaaaatctcGATGATAGATCCCAGCACTCCTTTTCATTCTGGGATGTAGGGGCATTGATTATTCTATTTCGGAGTAGTTTTTTTATATGGAATGGGGTTATGTTTGTGCTTCTCCAATCTTGCAGCACTTAGAAATACCACTGCCCCACACAGAATTGAGATTCCTTCCTTGTGTGTGACACTAATCCAGCTGTAACCTTTTCTGTAAACGTTATGAATAACCTCACCTCAAATGGTGAGTGGGCTAATGTTCACACACTGGAGCTCTGTCAACTGCATTTGCCCTGTGTGCTTCTCCACCGCGCCATGGGGAACTAAGGTCTTGCTTAGTGCACCTCATTTCAAATAAAAACGTGTAGAAAAAGTCTC