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Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Atp5md
Plot displaying the genomic locations of a parental gene (in chr19) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name ATP synthase membrane subunit DAPIT
Also known as 2010301L15Rik|Atp5mk|Usmg5
Coordinate chr19:47071910-47079086
Strand -
Gene summary Located in mitochondrion. Is expressed in several structures, including brain; cardiovascular system; genitourinary system; gut; and immune system. Human ortholog(s) of this gene implicated in mitochondrial complex V (ATP synthase) deficiency nuclear type 6. Orthologous to human ATP5MK (ATP synthase membrane subunit k). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Atp5md

Retroname Coord Strand Genomic Region ENSG
Atp5mdP4 chr11:55354557-55354905 - Intergenic
ENSMUSG00000081107 UCSC
Atp5mdP6 chr19:5489270-5489604 - Intergenic
ENSMUSG00000117845 UCSC
Atp5mdP1 chr2:57533568-57533816 - Intergenic
ENSMUSG00000084294 UCSC
Atp5mdP2 chr8:73284821-73285155 + Intergenic
ENSMUSG00000110532 UCSC
Atp5mdP8 chrX:18209984-18210302 + Intergenic
ENSMUSG00000081271 UCSC
Atp5mdP9 chrX:20447274-20447609 - Intragenic
ENSMUSG00000084830 UCSC
Atp5mdP7 chrX:150540910-150541234 - Intergenic
ENSMUSG00000081331 UCSC
Atp5mdP3 chr8:86258971-86259132 - Intergenic
N/A UCSC
Atp5mdP5 chr11:67326477-67326673 - Intergenic
N/A UCSC

Expression

Transcript Sequences

>NM_023211.5
GTCTTCCGGTCGGGCCGAGCTCGTCgctaggtttgttgaaggacatcgGCCGCCGAGTTTGGGGTTCGGACGAAGattgacGTCATGGCTGGTGCAGAAAGTGATGGCCAATTCCAGTTCACtggtattaaaaaatatttcaactcTTATACCCTCACAGGTAGAATGAATTGTGTCCTGGCCACATATGGAGGCATTGCTTTGCTGGTCTTATACTTCAAGTTAAGGCCTAAGAAAACTCCAGCTGTGAAAGCAACATAAATGGATTTTGAAATGTCTGACCTCACCTGTTAAGTCCCATGCCTGAAGAAGCTGATGTGAACTCATCATGTAATACTCAATTTGTACAATAAATTATGAACC