Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Rps21
Plot displaying the genomic locations of a parental gene (in chr2) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name ribosomal protein S21
Also known as 1810049N11Rik|2410030A14Rik
Coordinate chr2:179899172-179900237
Strand +
Gene summary Predicted to enable protein N-terminus binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation; endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); and endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Located in synapse. Orthologous to human RPS21 (ribosomal protein S21). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Rps21

Retroname Coord Strand Genomic Region ENSG
Rps21P6 chr19:53255189-53255330 + Intergenic
 ENSMUSG00000118350 UCSC
Rps21P2 chr10:79724502-79724848 + Intergenic
 ENSMUSG00000111897 UCSC
Rps21P3 chr16:35393639-35393969 - Intragenic
 ENSMUSG00000052192 UCSC
Rps21P4 chr16:88256787-88257139 + Intergenic
 ENSMUSG00000116845 UCSC
Rps21P5 chr18:8679007-8679354 + Intergenic
 ENSMUSG00000117424 UCSC
Rps21P1 chr2:60426339-60426682 - Intergenic
 ENSMUSG00000083195 UCSC

Expression

Transcript Sequences

>NM_001355517.1
CTCCTGCCCAATAGTGCTGCGGAGGCACGAGCTACTTCCTTTCTGCGCTCTCGCTGGACAAGTGAGCAGACTCGGAGTGCGGGCCTGACCAGTCTCAAGACCTGCGTGGTAACTCTGCAGGGACGGCCTCAGGATGCAGAACGACGCCGGCGAGTTTGTGGACCTGTACGTGCCGCGGAAATGCTCCGCAAGCAACCGCATCATTGCTGCCAAGGACCACGCGTCCATCCAGATGAACGTGGCCGAGgtTGATAGGACCACAGGCCGGTTTAATGGCCAGTTTAAAACCTATGGCATCTGCGGGGCCATTCGCAGGATGggcGAGTCAGATGATTCTATTCTCCGATTGGCTAAGGCTGATGGAATTGTCTCAAAGAACTTTTGAGCAGAAGAAATCGGGAATTTGTTACAAATAAAAGTTTTAAGTACCTGTGACAGTTAA
>NM_025587.2
CTCCTGCCCAATAGTGCTGCGGAGGCACGAGCTACTTCCTTTCTGCGCTCTCGCTGGACAAGTGAGCAGGGACGGCCTCAGGATGCAGAACGACGCCGGCGAGTTTGTGGACCTGTACGTGCCGCGGAAATGCTCCGCAAGCAACCGCATCATTGCTGCCAAGGACCACGCGTCCATCCAGATGAACGTGGCCGAGgtTGATAGGACCACAGGCCGGTTTAATGGCCAGTTTAAAACCTATGGCATCTGCGGGGCCATTCGCAGGATGggcGAGTCAGATGATTCTATTCTCCGATTGGCTAAGGCTGATGGAATTGTCTCAAAGAACTTTTGAGCAGAAGAAATCGGGAATTTGTTACAAATAAAAGTTTTAAGTACCTGTGACAGTTAA