Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Gene Name Rpl35
Plot displaying the genomic locations of a parental gene (in chr2) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name ribosomal protein L35
Also known as 2410039E09Rik
Coordinate chr2:38891593-38895143
Strand -
Gene summary Predicted to enable mRNA binding activity and ribonucleoprotein complex binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in cytosolic ribosome. Predicted to be part of cytosolic large ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 19. Orthologous to human RPL35 (ribosomal protein L35). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Rpl35

Retroname Coord Strand Genomic Region ENSG
Rpl35P3 chr1:86250944-86251347 + Intergenic
ENSMUSG00000091806 UCSC
Rpl35P1 chr1:118579214-118579567 - Intragenic
ENSMUSG00000101624 UCSC
Rpl35P13 chr10:33748596-33748821 - Intragenic
ENSMUSG00000112447 UCSC
Rpl35P14 chr10:70340671-70341109 - Intragenic
ENSMUSG00000112273 UCSC
Rpl35P15 chr11:54295125-54295274 + Intragenic
ENSMUSG00000084212 UCSC
Rpl35P17 chr14:33861365-33861809 + Intergenic
ENSMUSG00000115101 UCSC
Rpl35P18 chr15:28123311-28123752 - Intergenic
ENSMUSG00000115722 UCSC
Rpl35P19 chr15:81727508-81727953 - Intergenic
ENSMUSG00000069439 UCSC
Rpl35P20 chr18:20815613-20816059 - Intergenic
ENSMUSG00000091449 UCSC
Rpl35P5 chr2:66277344-66277772 - Intergenic
ENSMUSG00000080855 UCSC
Rpl35P6 chr4:45776822-45777251 - Intergenic
ENSMUSG00000083685 UCSC
Rpl35P7 chr4:51190106-51190498 + Intergenic
ENSMUSG00000084116 UCSC
Rpl35P8 chr5:135666025-135666389 - Intragenic
ENSMUSG00000082001 UCSC
Rpl35P9 chr6:29750762-29751154 + Intragenic
Intragenic
ENSMUSG00000081564 UCSC
Rpl35P10 chr7:127725962-127726388 + Intergenic
ENSMUSG00000108578 UCSC
Rpl35P11 chr8:124580530-124580974 + Intragenic
Intragenic
ENSMUSG00000083911 UCSC
Rpl35P23 chrX:47391719-47392159 - Intergenic
ENSMUSG00000081180 UCSC
Rpl35P22 chrX:140843794-140844248 + Intergenic
ENSMUSG00000083026 UCSC
Rpl35P2 chr1:156193609-156194054 + Intragenic
ENSMUSG00000078193 UCSC
Rpl35P4 chr2:126935097-126935356 - Intragenic
N/A UCSC
Rpl35P12 chr9:4348596-4348920 - Intergenic
N/A UCSC
Rpl35P16 chr11:84098569-84098998 - Intragenic
N/A UCSC
Rpl35P21 chrX:100110394-100111348 - Intergenic
N/A UCSC

Expression

Transcript Sequences

>NM_025592.3
ctctttctctcgaACCAGGCTGCTTCAGCCGTGAACAACGCCGAAATGGCCAAGATTAAGGCTCGGGACCTGCGcggcaagaagaaggaggagctgTTGAAACAACTGGACGATCTGAAGGTGGAATTGTCCCAGCTTCGGGTCGCCAAAGTGACAGGCGGCGCCGCGTCCAAGCTCTCCAAGATACGAGTCGTTCGCAAGTCTATCGCCCGAGTCCTCACTGTTATTAAccagactcaaaaagaaaacctcagGAAATTCTACAAGGGCAAGAAATACAAGCCCCTAGACCTGCGACCCAAGAAGACTAGAGCCATGCGCCGCCGGCTCACCAAGCACGAGGAGAAGCTGAAGACCAAGAAGCAGCAGCGGAAGGAGCGGCTGTATCCTCTGCGCAAGTATGCAGTCAAGGCCTGAGATGACAACGACAATAAAGTGCGAGACTGACTGGC