Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Gene Name Chtop
Plot displaying the genomic locations of a parental gene (in chr3) and its retrocopy(ies). Each line represents a retrocopy.
Specie Mus musculus
Full Name chromatin target of PRMT1
Also known as 2500003M10Rik|Fop|Srag
Coordinate chr3:90405846-90416805
Strand -
Gene summary Predicted to enable mRNA binding activity and methyl-CpG binding activity. Acts upstream of or within in utero embryonic development. Predicted to be located in cytoplasmic ribonucleoprotein granule. Predicted to be part of transcription export complex. Predicted to be active in nuclear speck. Is expressed in several structures, including alimentary system; dorsal root ganglion; integumental system; olfactory epithelium; and thymus. Orthologous to human CHTOP (chromatin target of PRMT1). [provided by Alliance of Genome Resources, Apr 2022]

Retrocopy(s) from Chtop

Retroname Coord Strand Genomic Region ENSG
ChtopP2 chr19:11854165-11856032 - Intergenic
 ENSMUSG00000051548 UCSC
ChtopP1 chr18:12306613-12307047 + Intragenic
Intragenic
 N/A UCSC

Expression

Transcript Sequences

>NM_001293776.1
CGGTCACGCTGCACTGGTGGGCCCGGCGGCCATTTTGTTTTGGACACCAAGCGGGAGTTGGCGGCGCCGGCTCTGGGGGCCCAGACGAAAGGCAGGAAAGGGCAGGCTTGACGAGCGGGAGGATCGGTCAGCTAGATACTCAACCCACAACGAGGAAGCCTCACATCCTACCGTTTAAGCATCTAAGCCAACCGCCCAGCTAGTTAACCCGAGCGGCCCGCCGTCAGCTCAGGTTAGGCCGGCCTCCGGGCCGCCCGCCGCAGCCGTGGTGGCAACCCCGGGAGGAGCGCTGGCGTCCATCTCCTTCGATTCTCGGGATTTGAAGATGGCTGCACAGTCAGCGCCGAAAGTTGTGCTAAAAAGCACCACCAAGATGTCTCTAAATGAGCGCTTTACTAATATGCTGAAGAACAAACAGCCGATGCCAGTGAATATTCGGGCTTcgatgcagcagcagcagcagctagccAGTGCCAGAAACAGAAGACTGGCCCAGCAGATGGAGAATAGACCCTCTGTCCAGGCAGCATTAAAACTTAAGCAGAAGAGCTTAAAGCAGCGCCTGGGTAAGAGTAATATCCAGGCACGGTTAGGCCGACCCATAGGTGCCCTGGCCAGGGGAGCAATTGGAGGAAGAGGCCTACCCATAATCCAGAGAGGCTTGCCCCGAGGAGGACTACGTGGGGGACGTGCTACCAGAACCCTGCTTAGGGGTGGGATGTCGCTCCGAGGTCAAAACCTGCTCCGAGGTGGACGAGCCGTAGCTCCCCGAATGGGCTTAAGAAGAGGTGGTGTTCGAGGTCGTGGAGGTCCTGGGAGAGGGGGCCTAGGGCGTGGAGCTATGGGTCGTGGCGGAATCGGTGGTAGAGGTCGGGGTATGATAGGTCGGGGAAGAGGgggctttggaggcagaggccgaGGTCGTGGCCGAGGGAGAGGTGCCCTCACTCGCCCTGTATTGACCAAGGAGCAGCTGGACAACCAATTGGATGCATACATGTCGAAAACTAAAGGACACCTGGATGCTGAATTGGATGCCTACATGGCACAGACAGATCCTGAAACCAATGATtgaagcctgcctgcctgcccgcctgcctgtTAGACTCTTGTTAAAGTCACCACATCTATAAAACAACCTTGAGAAAACATGAGAAGAAATCTGATCGATGCTGGAAGGACCTGTCACAATAGGCTGTGGACTTACCTGCCACCAGTTGGTGCATTTAGTCTGTTCTGTCTACTTTTTGATACTGTGTTATATGAAACcctattttcctttaaatttggttgagtttgttttgttgtttatccAGTCACCCAGATATCTGTTTGAACAGGAATGCGTTGGCCTTGTGAGTAGAACAGTTTTCTAGCCTCTGCCTGTCATATACTcttgacatttttaaatatttcctctgttgatttttatGATCCCAGAAGGAGCTAGAGTTTTCACTATTGGGTGGTCTTTGGgatagagttctacatctttcttTAAAAGCTTCTTGTTAATAGCTGGAGCTAAAGGTGTGTTTGCTATGTTGATAGTGAAGGTAGTAAATTGGAAATGTTGGTATTGCTACTGGGCCACAGAATGGGTAACACGTGGTACCAACTTTGATTTGGTCAAAGTTGATGTTGCCTACATTGAAACCACATAGATGGTAGCTGACAAGCTAAGTTGGAATTTCCACCCTAAGAAAAGATTTTTAAGCTTATaaatctctccttttggctttctgTCTCATGCCCAAGAGGCTTCTGCACCTCTCACAGAGAAGAAGCAGCTGTTGGTGTAGCACAAGTGGCAGAAGAGACAAGAGTGGGAAACTGGTAACAAACTGACTGCTGGGAAGGGCTCATGTGCTGCTCGTGCTGAAGTGCAGTTACCTTCCACTTAACTGGCTTTATTTGACCCTCTTGAAGGTTTAAGTTCAACCATATTTTGTCAGCTGTTCAGTTTCAGTGGAATCTTGTATTTCTGATTCATTATAACAAATTGTTCTCTCAAAATTTAACCCAGGCTTTCTGTTTATTTGGGGGGGTCTTAAAATGCTATATAACCATTTTTGTGGTGTGTTAATATGTCCCTTGTATAGTTGAAAATTCCTGGGGTGGAGCCAGGTAAGAGGGTGGTACAAACCATCTgccacttgggaagcagagacaggtgggttctAAGCCAGCTTGATCTCAGAATTAGTTACAgtttagccagggctacaccagccctgtctcaaaaaaaaaaaaagatattagggGTAGAGGAAATGTTGCTTTGTGGTAGAAAAAGCTTGTGTTCCCCTTTAAGCCTTTAGGAAGAATTACCTGCCTAGAAAGTACTAGTAGACTGGACCGTGGTTGTTTAGGAGAAAAGATCACAGGCCTCTTACTGTGCTGTGCATTAAGAGCCAGGAAGAAAATACTGAACAAGA
>NM_001293778.1
CGGTCACGCTGCACTGGTGGGCCCGGCGGCCATTTTGTTTTGGACACCAAGCGGGAGTTGGCGGCGCCGGCTCTGGGGGCCCAGACGAAAGGCAGGAAAGGGCAGGCTTGACGAGCGGGAGGATCGGTCAGCTAGATACTCAACCCACAACGAGGAAGCCTCACATCCTACCGTTTAAGCATCTAAGCCAACCGCCCAGCTAGTTAACCCGAGCGGCCCGCCGTCAGCTCAGGTTAGGCCGGCCTCCGGGCCGCCCGCCGCAGCCGTGGTGGCAACCCCGGGAGGAGCGCTGGCGTCCATCTCCTTCGATTCTCGGGATTTGAAGATGGCTGCACAGTCAGCGCCGAAAGTTGTGCTAAAAAGCACCACCAAGATGTCTCTAAATGAGCGCTTTACTAATATGCTGAAGAACAAACAGCCGATGCCAGTGAATATTCGGGCTTcgatgcagcagcagcagcagctagccAGTGCCAGAAACAGAAGACTGGCCCAGCAGATGGAGAATAGACCCTCTGTCCAGGCAGCATTAAAACTTAAGCAGAAGAGCTTAAAGCAGCGCCTGGGTAAGAGTAATATCCAGGCACGGTTAGGCCGACCCATAGGTGCCCTGGCCAGGGGAGCAATTGGAGGAAGAGGCCTACCCATAATCCAGAGAGGCTTGCCCCGAGGAGGACTACGTGGGGGACGTGCTACCAGAACCCTGCTTAGGGGTGGGATGTCGCTCCGAGGTCGGGGTATGATAGGTCGGGGAAGAGGgggctttggaggcagaggccgaGGTCGTGGCCGAGGGAGAGGTGCCCTCACTCGCCCTGTATTGACCAAGGAGCAGCTGGACAACCAATTGGATGCATACATGTCGAAAACTAAAGGACACCTGGATGCTGAATTGGATGCCTACATGGCACAGACAGATCCTGAAACCAATGATtgaagcctgcctgcctgcccgcctgcctgtTAGACTCTTGTTAAAGTCACCACATCTATAAAACAACCTTGAGAAAACATGAGAAGAAATCTGATCGATGCTGGAAGGACCTGTCACAATAGGCTGTGGACTTACCTGCCACCAGTTGGTGCATTTAGTCTGTTCTGTCTACTTTTTGATACTGTGTTATATGAAACcctattttcctttaaatttggttgagtttgttttgttgtttatccAGTCACCCAGATATCTGTTTGAACAGGAATGCGTTGGCCTTGTGAGTAGAACAGTTTTCTAGCCTCTGCCTGTCATATACTcttgacatttttaaatatttcctctgttgatttttatGATCCCAGAAGGAGCTAGAGTTTTCACTATTGGGTGGTCTTTGGgatagagttctacatctttcttTAAAAGCTTCTTGTTAATAGCTGGAGCTAAAGGTGTGTTTGCTATGTTGATAGTGAAGGTAGTAAATTGGAAATGTTGGTATTGCTACTGGGCCACAGAATGGGTAACACGTGGTACCAACTTTGATTTGGTCAAAGTTGATGTTGCCTACATTGAAACCACATAGATGGTAGCTGACAAGCTAAGTTGGAATTTCCACCCTAAGAAAAGATTTTTAAGCTTATaaatctctccttttggctttctgTCTCATGCCCAAGAGGCTTCTGCACCTCTCACAGAGAAGAAGCAGCTGTTGGTGTAGCACAAGTGGCAGAAGAGACAAGAGTGGGAAACTGGTAACAAACTGACTGCTGGGAAGGGCTCATGTGCTGCTCGTGCTGAAGTGCAGTTACCTTCCACTTAACTGGCTTTATTTGACCCTCTTGAAGGTTTAAGTTCAACCATATTTTGTCAGCTGTTCAGTTTCAGTGGAATCTTGTATTTCTGATTCATTATAACAAATTGTTCTCTCAAAATTTAACCCAGGCTTTCTGTTTATTTGGGGGGGTCTTAAAATGCTATATAACCATTTTTGTGGTGTGTTAATATGTCCCTTGTATAGTTGAAAATTCCTGGGGTGGAGCCAGGTAAGAGGGTGGTACAAACCATCTgccacttgggaagcagagacaggtgggttctAAGCCAGCTTGATCTCAGAATTAGTTACAgtttagccagggctacaccagccctgtctcaaaaaaaaaaaaagatattagggGTAGAGGAAATGTTGCTTTGTGGTAGAAAAAGCTTGTGTTCCCCTTTAAGCCTTTAGGAAGAATTACCTGCCTAGAAAGTACTAGTAGACTGGACCGTGGTTGTTTAGGAGAAAAGATCACAGGCCTCTTACTGTGCTGTGCATTAAGAGCCAGGAAGAAAATACTGAACAAGA